Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30445.Seq
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    51   8e-07
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    51   8e-07
AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical ...    29   4.9  

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 164
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/77 (36%), Positives = 38/77 (49%)
 Frame = +2

Query: 275 ELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINLYTAA 454
           ++D EGVI P++   +  MGD                   A  AFS   +D A+  +TAA
Sbjct: 83  KIDNEGVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAA 141

Query: 455 IQLNPQSALLFAKRGQV 505
           I+ NP SA+L AKR  V
Sbjct: 142 IEANPGSAMLHAKRANV 158



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 505 VLKLNKPNACIKDCTHALELNCDSA 579
           +LKL +P A I DC  A+ +N DSA
Sbjct: 159 LLKLKRPVAAIADCDKAISINPDSA 183


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 164
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/77 (36%), Positives = 38/77 (49%)
 Frame = +2

Query: 275 ELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINLYTAA 454
           ++D EGVI P++   +  MGD                   A  AFS   +D A+  +TAA
Sbjct: 83  KIDNEGVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAA 141

Query: 455 IQLNPQSALLFAKRGQV 505
           I+ NP SA+L AKR  V
Sbjct: 142 IEANPGSAMLHAKRANV 158



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 505 VLKLNKPNACIKDCTHALELNCDSA 579
           +LKL +P A I DC  A+ +N DSA
Sbjct: 159 LLKLKRPVAAIADCDKAISINPDSA 183


>AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical
           protein Y87G2A.6 protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 595 EFVKALRCHSSTLRHVCS 542
           EFVK  RCH S   H+C+
Sbjct: 89  EFVKHFRCHLSEFSHICA 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,874,623
Number of Sequences: 27780
Number of extensions: 337115
Number of successful extensions: 773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)