Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30444.Seq
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   123   2e-29
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   123   2e-29
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    29   0.70 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    28   0.93 
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   4.9  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   4.9  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   8.6  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   8.6  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  123 bits (296), Expect = 2e-29
 Identities = 55/86 (63%), Positives = 77/86 (89%)
 Frame = +3

Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
           KGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A
Sbjct: 54  KGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVA 113

Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
           + MR +S+A+ LSG+VKEILGTA S+
Sbjct: 114 RTMRFKSLAKELSGTVKEILGTAFSV 139



 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 40/52 (76%), Positives = 45/52 (86%)
 Frame = +1

Query: 97  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 252
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT D
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKD 52



 Score = 31.5 bits (68), Expect = 0.099
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 509 VGCTVEGRPPHDLIDDINSG 568
           VGCTV+G+ PHD+  +I++G
Sbjct: 139 VGCTVDGKNPHDVQKEIDNG 158


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  123 bits (296), Expect = 2e-29
 Identities = 55/86 (63%), Positives = 77/86 (89%)
 Frame = +3

Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
           KGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A
Sbjct: 54  KGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVA 113

Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
           + MR +S+A+ LSG+VKEILGTA S+
Sbjct: 114 RTMRFKSLAKELSGTVKEILGTAFSV 139



 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 40/52 (76%), Positives = 45/52 (86%)
 Frame = +1

Query: 97  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 252
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT D
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKD 52



 Score = 31.5 bits (68), Expect = 0.099
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 509 VGCTVEGRPPHDLIDDINSG 568
           VGCTV+G+ PHD+  +I++G
Sbjct: 139 VGCTVDGKNPHDVQKEIDNG 158


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 499  VPRISFTEPERYRAIDLFLMIFAMPI-TSSREMLPL 395
            V R+  ++PE     DLFL I A+ + TSS+ +LPL
Sbjct: 1475 VKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 19/85 (22%), Positives = 35/85 (41%)
 Frame = +3

Query: 264 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 443
           K + Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  
Sbjct: 23  KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82

Query: 444 RNRSMARYLSGSVKEILGTAQSLDV 518
           RNR     L  +V  I      +D+
Sbjct: 83  RNRKARENLKVNVSSIGEVLPEIDL 107


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 398 RQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 490
           + H+  +C  HC  H  +   PVP   +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 392 TQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 490
           T+  H P +   HC  H  + + PVP   +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 377 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 270
           +FT+ R  LK   +   CR N +  GLS   C  +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 176 DDVAPTSPPTHRKFTILI 123
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 555 SSIRSCGGLPSTVHPTTVLCQESLLLSQK 469
           ++ + C      VHP  V+C E +L SQK
Sbjct: 238 AATQKCPVCRRKVHPNKVICLEMMLGSQK 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,641
Number of Sequences: 5004
Number of extensions: 54192
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)