Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30444.Seq
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 135 3e-32
02_05_0416 + 28791512-28792012 131 4e-31
03_06_0776 - 36176390-36177589 29 3.8
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 28 6.7
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 6.7
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 28 6.7
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 28 6.7
07_03_0574 - 19629875-19631032 27 8.9
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 8.9
>04_04_1026 + 30214437-30214937
Length = 166
Score = 135 bits (326), Expect = 3e-32
Identities = 64/86 (74%), Positives = 80/86 (93%)
Frame = +3
Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
KGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA
Sbjct: 55 KGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIA 114
Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
+IMRNRSMA+ ++G+VKEILGT S+
Sbjct: 115 RIMRNRSMAKEMAGTVKEILGTCVSV 140
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = +1
Query: 97 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS 249
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA 51
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 509 VGCTVEGRPPHDLIDDINSG 568
VGCTV+G+ P DL +I+ G
Sbjct: 140 VGCTVDGKDPKDLQQEISDG 159
>02_05_0416 + 28791512-28792012
Length = 166
Score = 131 bits (317), Expect = 4e-31
Identities = 62/86 (72%), Positives = 79/86 (91%)
Frame = +3
Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
KGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA
Sbjct: 55 KGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIA 114
Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
++MR RSMA+ ++G+VKEILGT S+
Sbjct: 115 RVMRPRSMAKEMAGTVKEILGTCVSV 140
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = +1
Query: 97 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS 249
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA 51
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 509 VGCTVEGRPPHDLIDDINSG 568
VGCTV+G+ P DL +I+ G
Sbjct: 140 VGCTVDGKDPKDLQQEISDG 159
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 378 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 467
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 383 KYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSW 496
K+ + LP RCN+ C + + P PF S+ W
Sbjct: 145 KWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLW 182
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 94 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 222
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 351 KEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSLDVLWRA 530
K D +K K GN+ E + + +I++ R+ L G V E+ ++ LW
Sbjct: 291 KREMSDEEKHKLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWEL 350
Query: 531 GRHMI 545
R ++
Sbjct: 351 DRFVV 355
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 114 VKLRGHFVDYLVQLYTIITLNPNGWVWIPQ 25
V LR H L L + +P W+WI Q
Sbjct: 81 VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 430 MPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 302
+P E++P C ++F F R+ G SL A + AA +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 136 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 237
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,084,128
Number of Sequences: 37544
Number of extensions: 393074
Number of successful extensions: 1128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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