Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30444.Seq
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   8e-34
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              29   3.0  
SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)                       29   3.9  
SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)                      27   9.1  
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     27   9.1  
SB_40| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   9.1  
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)                  27   9.1  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  140 bits (339), Expect = 8e-34
 Identities = 66/86 (76%), Positives = 80/86 (93%)
 Frame = +3

Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
           KGLKITV LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV  +A
Sbjct: 54  KGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVA 113

Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
           K+MR RSMAR+LSG+VKEILGT QS+
Sbjct: 114 KVMRPRSMARHLSGTVKEILGTCQSV 139



 Score =  101 bits (241), Expect = 6e-22
 Identities = 46/52 (88%), Positives = 48/52 (92%)
 Frame = +1

Query: 97  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 252
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT D
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQD 52



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 509 VGCTVEGRPPHDLIDDINSG 568
           VGCTV+G  PHD+ID INSG
Sbjct: 139 VGCTVDGMAPHDVIDKINSG 158


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 23/61 (37%), Positives = 29/61 (47%)
 Frame = -2

Query: 344  SDDKGCCRGNNSYLGLSVLNCQLHSDLETLQSLVALAMSSPTFLGDRPRGPILGAKDDVA 165
            SD+K C R       LS L      ++ TL +L      S TF   +P GP+ G K DVA
Sbjct: 924  SDEKRCIRAF-----LSSLRNPSDDEVLTLMALPIFEAISGTFTAVQPDGPLRGEKLDVA 978

Query: 164  P 162
            P
Sbjct: 979  P 979


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 264 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 395
           ++ ++     RQ +   +PSA    IR  +E PR  +K  N+KH
Sbjct: 97  RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140


>SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)
          Length = 669

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = +3

Query: 381 KNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSL--DVLWRAGRHMILLM 554
           + I+ +   SL+ ++GIA+++RN  MA Y+    + +LGT+  L   VL    R+ ++ M
Sbjct: 39  EKIERHKKTSLQGLMGIAQMIRN--MAGYVDDLWEILLGTSTPLPVGVLTTEERNALVKM 96

Query: 555 T 557
           T
Sbjct: 97  T 97


>SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -2

Query: 323 RGNNSYLGLSVLNCQLHSDLETLQSLVALAMSSPTFLGDRPRGPI--LGAKD--DVAPTS 156
           R N+ +  L ++   + S  E  Q LVA+  ++ T L  RP  P+  L AK+  D  PT 
Sbjct: 122 RPNDGHDDLDLIMVYIRSVPEDSQKLVAIVRTTATVLFSRPSKPVVLLPAKENRDATPTK 181

Query: 155 PPTHRK 138
             T  K
Sbjct: 182 VITDVK 187


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -2

Query: 371 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLQSLVALAMSSPTFLGD 207
           +++  +  GSD+K CC      G  + LG+  +   +HSD++    L  LA     F+ +
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLHFMDE 167

Query: 206 R 204
           R
Sbjct: 168 R 168


>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
          Length = 193

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 515 CTVEGRPPHDLIDDINSG 568
           C VE  PPH++ D +N G
Sbjct: 156 CPVEPNPPHNMFDHVNLG 173


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 115 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 225
           P+     +L+C G E   TSS+ P +G LG   K  G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632


>SB_40| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 479 SKRDSWHSTVVGCTVEGRPPHDLIDDIN 562
           +K    H  V GC  +G+P HD +  I+
Sbjct: 124 AKAQGKHLVVAGCVPQGQPRHDTVKGIS 151


>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 374 KAEKYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSWHST 505
           + E+  T+    P RC R  ++HE   + P+P+ LS R+   +T
Sbjct: 393 RCERDSTEHDDSP-RCVRDSKEHEADTSSPLPY-LSLREKLSTT 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,056,569
Number of Sequences: 59808
Number of extensions: 424821
Number of successful extensions: 1059
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)