Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30444.Seq
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 133 8e-32
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 129 2e-30
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 129 2e-30
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c... 29 2.4
At2g31890.1 68415.m03896 expressed protein 28 4.2
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 28 4.2
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 28 5.6
At5g62170.1 68418.m07804 expressed protein various predicted pro... 27 7.4
At5g07210.1 68418.m00821 two-component responsive regulator fami... 27 7.4
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 27 7.4
At5g09740.1 68418.m01128 histone acetyltransferase, putative sim... 27 9.8
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 9.8
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 9.8
At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ... 27 9.8
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 133 bits (322), Expect = 8e-32
Identities = 65/86 (75%), Positives = 77/86 (89%)
Frame = +3
Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
KGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IA
Sbjct: 55 KGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIA 114
Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
KIMR RS+A+ LSG+VKEILGT S+
Sbjct: 115 KIMRPRSIAKELSGTVKEILGTCVSV 140
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +1
Query: 97 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS 249
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETA 51
Score = 33.9 bits (74), Expect = 0.085
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 509 VGCTVEGRPPHDLIDDINSG 568
VGCTV+G+ P DL ++INSG
Sbjct: 140 VGCTVDGKDPKDLQEEINSG 159
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 129 bits (311), Expect = 2e-30
Identities = 62/86 (72%), Positives = 76/86 (88%)
Frame = +3
Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
KGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA
Sbjct: 55 KGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIA 114
Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
+IMR RS+A+ LSG+V+EILGT S+
Sbjct: 115 RIMRPRSIAKELSGTVREILGTCVSV 140
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +1
Query: 97 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS 249
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETA 51
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 509 VGCTVEGRPPHDLIDDINSG 568
VGCTV+G+ P DL +I G
Sbjct: 140 VGCTVDGKDPKDLQQEIQEG 159
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 129 bits (311), Expect = 2e-30
Identities = 62/86 (72%), Positives = 76/86 (88%)
Frame = +3
Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
KGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA
Sbjct: 55 KGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIA 114
Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
+IMR RS+A+ LSG+V+EILGT S+
Sbjct: 115 RIMRPRSIAKELSGTVREILGTCVSV 140
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +1
Query: 97 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS 249
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETA 51
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 509 VGCTVEGRPPHDLIDDINSG 568
VGCTV+G+ P D+ +I G
Sbjct: 140 VGCTVDGKDPKDIQQEIQDG 159
>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
domain-containing protein low similarity to DEAD box
protein DDX1 [Gallus gallus] GI:16323037, ryanodine
receptor [Caenorhabditis elegans] GI:1871447; contains
Pfam profile PF00622: SPRY domain
Length = 509
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 243 HK*LKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNI 407
HK LK L + V+ + V+PS A ++ A KK K+ K N N+
Sbjct: 172 HKKLKQLDCLTSVAVKEEEEPEQVLPSEAMVVEEAATLVASAAKKSKSKKKNNNV 226
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 354 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 461
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -3
Query: 439 IFAMPITSSREMLPLCLIFFCFL 371
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 475 PERYRAIDLFLMIFAMPITSSREMLPLCLIFFCFLRSRGGSLRA 344
P R+ ++ + I + ++ +L LC+++ C+ + R S+RA
Sbjct: 645 PRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRA 688
>At5g62170.1 68418.m07804 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 703
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 268 ILRPFSHLWPWQCHHP 221
IL+P +L PW CH+P
Sbjct: 564 ILKPHINLKPWVCHYP 579
>At5g07210.1 68418.m00821 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 621
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 287 NCQLHSDLETLQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRK 138
NC SD T+ S +S+ +R R P G DD S P +K
Sbjct: 182 NCSFKSDSRTVNSTNGSCVSTDGSRKNRKRKPNGGPSDDGESMSQPAKKK 231
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 576 GQTPLLMSS-IRSCGGLPSTVHPTTVLCQESLLLS 475
GQ+P+L++S + GG+PS V+P ++L + ++S
Sbjct: 731 GQSPVLVASTLLLNGGVPSNVNPASLLRESIQVIS 765
>At5g09740.1 68418.m01128 histone acetyltransferase, putative
similar to histone acetyltransferase [Homo sapiens]
gi|8317213|gb|AAF72665
Length = 445
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 390 KHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSLDVL-WRAGRHMI 545
KH GNIS++++ + I ++IL T QSL+++ +R G+H+I
Sbjct: 370 KHKGNISIKELSDVTAI------------KAEDILSTLQSLELIQYRKGQHVI 410
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 154 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 252
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 154 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 252
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
putative similar to cellulose synthase-1 [gi:9622874]
and -2 [gi:9622876] from Zea mays
Length = 1065
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -1
Query: 576 GQTPLLMSS-IRSCGGLPSTVHPTTVL 499
GQ+P+ +++ GGLPST +P T+L
Sbjct: 710 GQSPVFIAATFMEQGGLPSTTNPLTLL 736
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,439
Number of Sequences: 28952
Number of extensions: 300821
Number of successful extensions: 793
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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