Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30443.Seq
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    25   0.66 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   6.1  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   8.1  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 291 WDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISA 413
           W K L   Q++ +E FK+  LPL  +K+  K++ +V++  A
Sbjct: 15  WGKSLSIPQQILNE-FKSTLLPLFGLKEQPKIEGKVQVPEA 54


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 332 FGINFLYVL*DFVPELLEGFCAASAET 252
           F +NF+     F   L+ G+   +AET
Sbjct: 38  FDVNFIDPALQFCTHLIYGYAGINAET 64


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 144 KLVEKTTKCPCASLCLP 194
           K ++ TTK P   +C P
Sbjct: 113 KFIKVTTKAPLECMCRP 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,498
Number of Sequences: 336
Number of extensions: 2424
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)