Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30443.Seq
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    70   2e-13
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    40   4e-04
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.0  

>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
 Frame = +3

Query: 270 AETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVK--MISAEAPVLFAKAA 443
           A+ L ++W K ++ ++  + +  KT  LPLARIKK+MK D++VK  MISAEAP LFAK +
Sbjct: 83  AQALAEYWQKTIDTLEH-DDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGS 141

Query: 444 XIFIHELT 467
            IFI ELT
Sbjct: 142 EIFIAELT 149


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 318 KVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHEL 464
           K N   +     P+ARIKKIM+ D++V  ++   PV+ +KA  +F+  +
Sbjct: 13  KPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSI 61


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 173  WTFCSFFNQLHETNAPMFLFNYHSKLILKLCFGKL 69
            WTF  F+ Q++      +LF+Y   ++  L F  L
Sbjct: 1080 WTFTLFWYQIYNNFDANYLFDYTYVMLFNLIFSSL 1114


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 324 NSEDFKTQALPLARIKKIMKL 386
           N ++ K Q LPL  IKKI K+
Sbjct: 16  NLQEVKPQVLPLEEIKKIYKI 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,812
Number of Sequences: 5004
Number of extensions: 40354
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)