Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30443.Seq
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1057 + 27248249-27249001 84 7e-17
03_02_0380 - 7945959-7946699 82 3e-16
02_01_0529 - 3846489-3847268 81 5e-16
09_04_0535 + 18397051-18397644 74 8e-14
08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150 73 1e-13
08_02_1128 + 24510735-24511055 44 7e-05
01_01_0018 + 139150-140415 43 2e-04
01_05_0464 - 22470963-22472291 43 2e-04
04_04_1632 - 34926955-34927332 42 5e-04
01_01_0592 + 4414416-4415132 41 7e-04
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 40 0.001
05_05_0328 + 24130887-24130919,24132207-24132279,24133542-241336... 40 0.001
01_03_0204 + 13771346-13772680 40 0.002
10_02_0162 + 6054823-6055830 38 0.006
05_03_0410 + 13616708-13617691 37 0.011
06_01_0582 + 4172154-4173614 31 0.94
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 30 1.2
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 29 2.9
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 27 8.8
>06_03_1057 + 27248249-27249001
Length = 250
Score = 84.2 bits (199), Expect = 7e-17
Identities = 43/63 (68%), Positives = 50/63 (79%)
Frame = +3
Query: 279 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIH 458
LQQFW + L DI++ DFK +LPLARIKKIMK DE+V+MISAEAPV+FAKA IFI
Sbjct: 80 LQQFWAERLVDIEQTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFIL 137
Query: 459 ELT 467
ELT
Sbjct: 138 ELT 140
>03_02_0380 - 7945959-7946699
Length = 246
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/63 (61%), Positives = 48/63 (76%)
Frame = +3
Query: 279 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIH 458
LQ FW ++ ++ ++ DFK LPLARIKKIMK DE+V+MISAEAPVLFAKA +FI
Sbjct: 46 LQAFWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFIL 105
Query: 459 ELT 467
ELT
Sbjct: 106 ELT 108
>02_01_0529 - 3846489-3847268
Length = 259
Score = 81.4 bits (192), Expect = 5e-16
Identities = 39/65 (60%), Positives = 51/65 (78%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
+ L++FW +E+I++ DFK +LPLARIKKIMK DE+V+MISAEAPV+FAKA +F
Sbjct: 82 QQLREFWANQMEEIEQTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVF 139
Query: 453 IHELT 467
I ELT
Sbjct: 140 ILELT 144
>09_04_0535 + 18397051-18397644
Length = 197
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/65 (56%), Positives = 47/65 (72%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
+ LQ FW + +I+ DFK LPLARIKKIMK DE+V+MI+AEAPV+FA+A +F
Sbjct: 58 QQLQMFWAEQYREIEATT--DFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMF 115
Query: 453 IHELT 467
I ELT
Sbjct: 116 ILELT 120
>08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150
Length = 276
Score = 73.3 bits (172), Expect = 1e-13
Identities = 41/99 (41%), Positives = 60/99 (60%)
Frame = +3
Query: 171 PCASLCLPNKQRRLPRPKKWTLMLPVRSLR*GGAETLQQFWDKVLEDIQKVNSEDFKTQA 350
P + P +LP ++ + V+ L+ E LQ FW + +++++ +FK
Sbjct: 71 PQVAPAYPVNPMQLPEHQQHAIQ-QVQQLQQQQKEQLQAFWADQMAEVEQMT--EFKLPN 127
Query: 351 LPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHELT 467
LPLARIKKIMK DE+VKMI+ EAP LFAKA +FI ++T
Sbjct: 128 LPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMT 166
>08_02_1128 + 24510735-24511055
Length = 106
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +3
Query: 378 MKLDEEVKMISAEAPVLFAKAAXIFIHELT 467
MK DE+V+MI+AEAPV+FA+A +FI ELT
Sbjct: 1 MKADEDVRMIAAEAPVVFARACEMFILELT 30
>01_01_0018 + 139150-140415
Length = 421
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 231 TLMLPVRSLR*GGAETLQQFWDKVLEDIQKV--NSEDFKTQALPLARIKKIMKLDEEVKM 404
TL +P RSLR + QQ D+ D QK ++DF A+P+AR+KKI + M
Sbjct: 4 TLDVP-RSLRLPTPKAQQQM-DEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMM 61
Query: 405 ISAEAPVLFAKAAXIFIHEL 464
+S + P +K +F+ EL
Sbjct: 62 MSFDMPAFLSKMCELFVQEL 81
>01_05_0464 - 22470963-22472291
Length = 442
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +3
Query: 231 TLMLPVRSLR*GGAETLQQFWDKVLEDIQKV--NSEDFKTQALPLARIKKIMKLDEEVKM 404
TL +P RSLR + QQ D+ D QK ++DF A+P+AR+KKI+ + M
Sbjct: 4 TLDVP-RSLRLLAPKAQQQM-DEFWRDRQKEIETTKDFSEHAIPMARLKKIVSSQKGNMM 61
Query: 405 ISAEAPVLFAKAAXIFIHEL 464
++ + P +K +F+ EL
Sbjct: 62 MTFDMPAFLSKMCELFVQEL 81
>04_04_1632 - 34926955-34927332
Length = 125
Score = 41.5 bits (93), Expect = 5e-04
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 14/54 (25%)
Frame = +3
Query: 348 ALPLARIKKIMKL---DEEV-----------KMISAEAPVLFAKAAXIFIHELT 467
ALPLARIKKIMK D V +MIS EAPV+F+KA +FI ELT
Sbjct: 23 ALPLARIKKIMKRSAGDSSVVDGGGGGGGGARMISGEAPVVFSKACELFIAELT 76
>01_01_0592 + 4414416-4415132
Length = 238
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Frame = +3
Query: 294 DKVLEDIQKVNSE----DFKTQ--ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFI 455
D+ E +++V E D Q ALPL R+K+I+++D ++K ++ EA +L A A +F+
Sbjct: 94 DEATEPMEQVEGEGEDGDAAAQRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFV 153
Query: 456 HEL 464
L
Sbjct: 154 GSL 156
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 354 PLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHEL 464
P ARIKKIM+ DE+V I+ PVL ++A +F+ +L
Sbjct: 10 PAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDL 46
>05_05_0328 +
24130887-24130919,24132207-24132279,24133542-24133635,
24133924-24134037,24134121-24134169,24134364-24134873
Length = 290
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 354 PLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHELTXPXL-VRIRRKIKGRTSA 518
P RIKKIM+ DE+V I+ PVL +KA +F+ +L + ++R +K +S+
Sbjct: 10 PAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSS 65
>01_03_0204 + 13771346-13772680
Length = 444
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
+ + +FW ++I+ ++DF +P+AR+KKI+ + M++ + P +K +F
Sbjct: 20 QQMDEFWRDRQKEIEM--TKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELF 77
Query: 453 IHEL 464
+ EL
Sbjct: 78 VQEL 81
>10_02_0162 + 6054823-6055830
Length = 335
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 279 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIH 458
+++FW E I++ S + LP++R+K I+ E M+SA+ P K +F+
Sbjct: 31 MEKFWRMSQEQIEE--SAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQ 88
Query: 459 EL 464
EL
Sbjct: 89 EL 90
>05_03_0410 + 13616708-13617691
Length = 327
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +3
Query: 279 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIH 458
+++FW + E I+ S LP+ +K +++ + M+SA+ P K +F+
Sbjct: 31 MEEFWRRSQEQIEA--SAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQ 88
Query: 459 ELT 467
ELT
Sbjct: 89 ELT 91
>06_01_0582 + 4172154-4173614
Length = 486
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 295 SQNCWRVSAPPQRRLLTGNISVHFFGRGNRRCL 197
+Q CW+V +P RR+L +S H RRCL
Sbjct: 430 AQRCWKVPSPVLRRVLRRTVSEHVV-PAYRRCL 461
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 277 VSAPPQRRLLTGNISVHFFGRGNRRCLFGRHKEAHGHFV 161
VSAPPQ + I+ H FG R RH A GH V
Sbjct: 19 VSAPPQHLVFAYYITGHGFGHATRALEVVRHLIAAGHDV 57
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 333 DFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFI 455
D + P+AR+++IM+ ++ S EA L KA IF+
Sbjct: 200 DHGAGSFPMARVRQIMRAEDATIRPSNEAVFLINKATEIFL 240
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -1
Query: 302 DFVPELLEGFCAASAETPHRQHQRPLLRTW 213
+F+P++L+G + TP+RQ+ ++ W
Sbjct: 506 NFLPKILQGLAELADRTPNRQYINDIMVGW 535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,657
Number of Sequences: 37544
Number of extensions: 275663
Number of successful extensions: 665
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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