Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30443.Seq
(608 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49434| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.6e-08) 34 0.10
SB_49885| Best HMM Match : Phi-29_GP4 (HMM E-Value=3.4) 30 1.3
SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_8819| Best HMM Match : I-set (HMM E-Value=0) 28 5.1
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.8
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 28 6.8
SB_2168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_39987| Best HMM Match : FtsL (HMM E-Value=0.4) 27 9.0
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 27 9.0
>SB_49434| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.6e-08)
Length = 120
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 330 EDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHELTXPXLVRIRRK 497
E K LPL++IK I+K ++ IS E+ L A++ +F++ L L + K
Sbjct: 9 ESGKLTQLPLSKIKTILKSSPDLANISQESLFLIARSTEVFVNYLAVAALKKEESK 64
>SB_49885| Best HMM Match : Phi-29_GP4 (HMM E-Value=3.4)
Length = 307
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLF 431
E+LQ W++ D +KVN + AL +++M + ++ I +E P LF
Sbjct: 197 ESLQNEWERRTPDFKKVN----RRMALTFPDRRRLMNSNPNIRDIQSEYPALF 245
>SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 164 KMSMCFFVPAEQXXXXXXSEEVDADVAGEESPLRR 268
K S+C F P + SE+ A+ A + PLRR
Sbjct: 215 KRSICHFDPIDMEAITRFSEKCSAETADTQRPLRR 249
>SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 227 VDADVAGEESPLRRRRNPPAVLGQSLRGHTES*FRRLQDPSFAVGSHQEDHETRRGGEDD 406
+D D+ ++ RN PA Q++ E R+ S ++QEDH T +GG
Sbjct: 185 LDEDIEHKQLSPGDHRNAPAGKSQTMTELPEG-ERKSITTSIHTTTNQEDHHTFQGGSSS 243
Query: 407 ISRG 418
RG
Sbjct: 244 HYRG 247
>SB_8819| Best HMM Match : I-set (HMM E-Value=0)
Length = 1789
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 435 KAAXIFIHELTXPXLVRIRRKIK 503
K A +FIHE+T P +V+ + ++K
Sbjct: 744 KQAPVFIHEITKPVVVKEKEQVK 766
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 157 FSTNFTRQTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGN 35
FS + R HR FYS T + YV+ +Y FR HG+
Sbjct: 797 FSIEYWRWHHR-FYSGSTATIRIFYVVHHYKPFRVDLPHGH 836
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 244 GNISVHFFGRGNRR 203
G+ISVH FGRGN R
Sbjct: 116 GDISVHLFGRGNDR 129
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 294 DKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVL 428
D L DIQ +E K ++ L ++KK+ K ++E K + VL
Sbjct: 977 DSKLNDIQSKFTETEKEKSQLLDKVKKLEKSEKEFKQLEYNITVL 1021
>SB_2168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 157 FSTNFTRQTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGNQ*SEYYLEI 8
+S + R H F+S T +++Y++ +Y FR HG+ YLEI
Sbjct: 75 YSIEYWRWPHP-FFSGSTATIWISYLVHHYKPFRVDLSHGHS-GYVYLEI 122
>SB_39987| Best HMM Match : FtsL (HMM E-Value=0.4)
Length = 573
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 296 VPELLEGFCAASAETPHRQHQRPLLRTW 213
+P L+ F A S +T HRQ L + W
Sbjct: 270 LPGSLKSFMATSEDTSHRQRNSALQKAW 297
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 348 ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHELTXPXLVRIRRKIKGRTSAAQ 524
AL + + I +++E+ SAEA + + IF+H L + K+ R++ A+
Sbjct: 8 ALEVDDVAWISRIEEDAGRKSAEAKFCYLQMEIIFLHALEVDDIAWTEEKVGKRSADAK 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,016,737
Number of Sequences: 59808
Number of extensions: 315043
Number of successful extensions: 710
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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