Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30443.Seq
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans N...    57   9e-09
AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical ...    48   7e-06
AL021487-5|CAA16350.1|  244|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z70753-7|CAD82914.1|  305|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z70753-6|CAA94762.1|  331|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL021487-4|CAA16351.1|  244|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans
           NFYC-1 protein protein.
          Length = 232

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 33/100 (33%), Positives = 59/100 (59%), Gaps = 10/100 (10%)
 Frame = +3

Query: 282 QQFWDKVLEDIQKVNSEDF----KTQALPLARIKKIMKLDEEVK--MISAEAPVLFAKAA 443
           + FW +  + + +++ ED     K  ++P+AR+KKIM++D++V+  MI+++AP+  A+AA
Sbjct: 83  EDFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQAA 142

Query: 444 XIFIHELT---XPXLVRIRRKIKGRTSAAQA-SISEQLXF 551
             FI E+T      +   RR+I  +   A A   S+Q  F
Sbjct: 143 EFFIEEMTAMGWQYVSEARRRILQKADIASAVQKSDQFDF 182


>AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical
           protein Y53F4B.3 protein.
          Length = 179

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 22/56 (39%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
 Frame = +3

Query: 306 EDIQKVNS--EDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHELT 467
           ED++++    E+     LPL R+KK+++++ +V+M++ EA  L AKAA +FI EL+
Sbjct: 19  EDVREIEEHVEELVRSQLPLGRVKKVVRMNPDVEMLNNEALQLMAKAAELFIKELS 74


>AL021487-5|CAA16350.1|  244|Caenorhabditis elegans Hypothetical
           protein Y45F10B.9 protein.
          Length = 244

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 297 KVL-EDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHELTXP 473
           K+L E++ K+ ++  KT+   +  +  +++ DE++K I  E  ++  + +  F  ELT  
Sbjct: 100 KILDEELDKLEAKISKTEESLVQSVSMLLEKDEQLKTIRKEMKIMDDERS-AFDQELTRL 158

Query: 474 XLVRIRRKIKGRTSAAQASISEQLXFDN 557
              R+  +     S  + +I   L +DN
Sbjct: 159 KTSRLENEKSSLASRVECTIC-YLSYDN 185


>AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.7 protein.
          Length = 252

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 128 PMFLFNYHSKLILKLCFGKLL 66
           PM +FN  S L + +CFG LL
Sbjct: 122 PMIIFNTSSALSISICFGNLL 142


>Z70753-7|CAD82914.1|  305|Caenorhabditis elegans Hypothetical
           protein F40F9.7b protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 336 FKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
           F T  +   RIKK+M+ DE++  +    PV   +A   F
Sbjct: 35  FSTAKIQPTRIKKVMQSDEDIGRMVQSVPVSIGRAMEHF 73


>Z70753-6|CAA94762.1|  331|Caenorhabditis elegans Hypothetical
           protein F40F9.7a protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 336 FKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
           F T  +   RIKK+M+ DE++  +    PV   +A   F
Sbjct: 61  FSTAKIQPTRIKKVMQSDEDIGRMVQSVPVSIGRAMEHF 99


>AL021487-4|CAA16351.1|  244|Caenorhabditis elegans Hypothetical
           protein Y45F10B.8 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 297 KVLED-IQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHELTXP 473
           K+L++ + K+ ++  KT+   +  +  +++ DE++K I  E  ++  + +  F  ELT  
Sbjct: 100 KILDEKLDKLEAKISKTEESLVQSVSMLLEKDEQLKTIRKEMKIMDDERS-AFDQELTRL 158

Query: 474 XLVRIRRKIKGRTSAAQASISEQLXFDN 557
              R+  +     S  + +I   L +DN
Sbjct: 159 KTSRLENEKSSLASRVECTIC-YLSYDN 185


>AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.8 protein.
          Length = 193

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 346 WVLKSSELTFCMS-SKTLSQNCWRVSAPPQRRLLTGNISVHFFGRGNRRC 200
           W+L+S   +F +   K  S N   V     ++L    +  HF+G G + C
Sbjct: 63  WLLESVRSSFSIQLPKAYSVNMQNVLNADSKKLNLSGLQQHFYGNGMQLC 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,570,371
Number of Sequences: 27780
Number of extensions: 231800
Number of successful extensions: 568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)