Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30443.Seq
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.11 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.11 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 277 VSAPPQRRLLTGNISVHFFGRGNRRCLFGRHKEAHGHFVVF 155
           V+AP    +    +SVH  G    RC    H +A  HF+ +
Sbjct: 327 VTAPLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGPHFITW 367


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 277 VSAPPQRRLLTGNISVHFFGRGNRRCLFGRHKEAHGHFVVF 155
           V+AP    +    +SVH  G    RC    H +A  HF+ +
Sbjct: 327 VTAPLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGPHFITW 367


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 260 AETPHRQHQRPLLRTW*PS 204
           A TPH QH  PL  +  P+
Sbjct: 437 AATPHHQHSTPLAHSSYPA 455


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 362 SQRQSLGLEVFGINFLYVL 306
           S+ + +G EVF +NF+ V+
Sbjct: 203 SEFRRMGREVFAVNFMNVM 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,446
Number of Sequences: 438
Number of extensions: 2767
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)