Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30443.Seq
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63470.1 68418.m07968 CCAAT-box binding transcription factor ... 83 2e-16
At1g08970.4 68414.m01000 CCAAT-box binding transcription factor ... 82 2e-16
At1g08970.3 68414.m00999 CCAAT-box binding transcription factor ... 82 2e-16
At1g08970.2 68414.m00998 CCAAT-box binding transcription factor ... 82 2e-16
At1g08970.1 68414.m00997 CCAAT-box binding transcription factor ... 82 2e-16
At3g48590.1 68416.m05305 CCAAT-box binding transcription factor ... 82 3e-16
At1g54830.3 68414.m06253 CCAAT-box binding transcription factor ... 81 7e-16
At1g54830.2 68414.m06252 CCAAT-box binding transcription factor ... 81 7e-16
At1g54830.1 68414.m06251 CCAAT-box binding transcription factor ... 81 7e-16
At1g56170.1 68414.m06454 transcription factor, putative similar ... 80 1e-15
At5g27910.1 68418.m03352 CCAAT-box binding transcription factor ... 69 3e-12
At5g50480.1 68418.m06252 CCAAT-box binding transcription factor ... 67 7e-12
At5g50490.1 68418.m06254 CCAAT-box binding transcription factor ... 61 5e-10
At5g50470.1 68418.m06250 CCAAT-box binding transcription factor ... 57 1e-08
At5g38140.1 68418.m04596 histone-like transcription factor (CBF/... 51 5e-07
At3g12480.1 68416.m01553 transcription factor, putative 40 0.001
At5g43250.1 68418.m05285 transcription factor, putative similar ... 38 0.007
At1g60440.1 68414.m06804 eukaryotic pantothenate kinase family p... 30 1.0
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 29 1.8
At3g09580.1 68416.m01138 amine oxidase family protein low simila... 29 1.8
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 27 7.4
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 27 7.4
At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r... 27 7.4
At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 fam... 27 7.4
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR... 27 9.7
>At5g63470.1 68418.m07968 CCAAT-box binding transcription factor
Hap5a, putative
Length = 250
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
+ LQ FW ++I++VN DFK LPLARIKKIMK DE+V+MISAEAP+LFAKA +F
Sbjct: 55 QQLQMFWTYQRQEIEQVN--DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELF 112
Query: 453 IHELT 467
I ELT
Sbjct: 113 ILELT 117
>At1g08970.4 68414.m01000 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = +3
Query: 270 AETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXI 449
A+ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A +
Sbjct: 56 AQQLQAFWENQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEM 113
Query: 450 FIHELT 467
FI ELT
Sbjct: 114 FILELT 119
>At1g08970.3 68414.m00999 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = +3
Query: 270 AETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXI 449
A+ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A +
Sbjct: 56 AQQLQAFWENQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEM 113
Query: 450 FIHELT 467
FI ELT
Sbjct: 114 FILELT 119
>At1g08970.2 68414.m00998 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = +3
Query: 270 AETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXI 449
A+ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A +
Sbjct: 56 AQQLQAFWENQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEM 113
Query: 450 FIHELT 467
FI ELT
Sbjct: 114 FILELT 119
>At1g08970.1 68414.m00997 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = +3
Query: 270 AETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXI 449
A+ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A +
Sbjct: 56 AQQLQAFWENQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEM 113
Query: 450 FIHELT 467
FI ELT
Sbjct: 114 FILELT 119
>At3g48590.1 68416.m05305 CCAAT-box binding transcription factor
Hap5a, putative
Length = 234
Score = 81.8 bits (193), Expect = 3e-16
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
+ LQ FW ++I++VN DFK LPLARIKKIMK DE+V+MISAEAP+LFAKA +F
Sbjct: 42 QQLQLFWTYQRQEIEQVN--DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELF 99
Query: 453 IHELT 467
I ELT
Sbjct: 100 ILELT 104
>At1g54830.3 68414.m06253 CCAAT-box binding transcription factor
Hap5a, putative similar to heme activated protein
GI:6289057 from (Arabidopsis thaliana) GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
similar to Transcription factor GB:CAA74053 GI:2398533
from [Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 217
Score = 80.6 bits (190), Expect = 7e-16
Identities = 39/65 (60%), Positives = 50/65 (76%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
+ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A +F
Sbjct: 47 QQLQSFWETQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMF 104
Query: 453 IHELT 467
I ELT
Sbjct: 105 ILELT 109
>At1g54830.2 68414.m06252 CCAAT-box binding transcription factor
Hap5a, putative similar to heme activated protein
GI:6289057 from (Arabidopsis thaliana) GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
similar to Transcription factor GB:CAA74053 GI:2398533
from [Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 217
Score = 80.6 bits (190), Expect = 7e-16
Identities = 39/65 (60%), Positives = 50/65 (76%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
+ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A +F
Sbjct: 47 QQLQSFWETQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMF 104
Query: 453 IHELT 467
I ELT
Sbjct: 105 ILELT 109
>At1g54830.1 68414.m06251 CCAAT-box binding transcription factor
Hap5a, putative similar to heme activated protein
GI:6289057 from (Arabidopsis thaliana) GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
similar to Transcription factor GB:CAA74053 GI:2398533
from [Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 217
Score = 80.6 bits (190), Expect = 7e-16
Identities = 39/65 (60%), Positives = 50/65 (76%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
+ LQ FW+ ++I+K DFK +LPLARIKKIMK DE+V+MISAEAPV+FA+A +F
Sbjct: 47 QQLQSFWETQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMF 104
Query: 453 IHELT 467
I ELT
Sbjct: 105 ILELT 109
>At1g56170.1 68414.m06454 transcription factor, putative similar to
Transcription factor GB:CAA74053 GI:2398533 from
[Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 199
Score = 80.2 bits (189), Expect = 1e-15
Identities = 39/65 (60%), Positives = 50/65 (76%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
+ LQ FW +++I+ ++ DFK LPLARIKKIMK DE+V+MISAEAPV+FAKA +F
Sbjct: 53 QQLQMFWANQMQEIE--HTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMF 110
Query: 453 IHELT 467
I ELT
Sbjct: 111 ILELT 115
>At5g27910.1 68418.m03352 CCAAT-box binding transcription factor
Hap5a, putative
Length = 187
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Frame = +3
Query: 267 GAETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAX 446
G E L+ FW K +E + DFK LP+ RIKKIMK D +V MI++EAP+L +KA
Sbjct: 14 GNEQLKSFWSKEME-----GNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACE 68
Query: 447 IFIHELTXPXLVRIR--RKIKGRTSAAQASISEQLXFD 554
+FI +LT + + +++ + S A++++ + FD
Sbjct: 69 MFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFD 106
>At5g50480.1 68418.m06252 CCAAT-box binding transcription factor
Hap5a, putative GI:14577940 CCAAT-binding protein
subunit HAP5 {Hypocrea jecorina} similar to
Transcription factor GB:CAA74053 GI:2398533 from
[Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 202
Score = 67.3 bits (157), Expect = 7e-12
Identities = 33/63 (52%), Positives = 45/63 (71%)
Frame = +3
Query: 279 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIH 458
L+ +W + +E + DFK + LPLARIKKIMK D +V M+SAEAP++FAKA +FI
Sbjct: 36 LRNYWIEQMETVS-----DFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIV 90
Query: 459 ELT 467
+LT
Sbjct: 91 DLT 93
>At5g50490.1 68418.m06254 CCAAT-box binding transcription factor
Hap5a, putative
Length = 186
Score = 61.3 bits (142), Expect = 5e-10
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Frame = +3
Query: 273 ETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIF 452
E L+ FW K +E V + +F P++RIK+IMK D +V MI+AEAP L +KA +F
Sbjct: 16 EQLKSFWSKGMEGDLNVKNHEF-----PISRIKRIMKFDPDVSMIAAEAPNLLSKACEMF 70
Query: 453 IHELTXPXLVRIR--RKIKGRTSAAQASISEQLXFD 554
+ +LT + + ++ R S A +S+ + FD
Sbjct: 71 VMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFD 106
>At5g50470.1 68418.m06250 CCAAT-box binding transcription factor
Hap5a, putative contains similarity to GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
Length = 212
Score = 56.8 bits (131), Expect = 1e-08
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +3
Query: 192 PNKQRRLPRPKKWTLM-LPVRSLR*GGAETLQQFWDKVLEDIQKVNSEDFKTQALPLARI 368
P+ + P P + M LP SL + ++ +W Q N+ D K A PL RI
Sbjct: 15 PSSSQLPPPPLYYQSMPLPSYSLPLPYSPQMRNYWIA-----QMGNATDVKHHAFPLTRI 69
Query: 369 KKIMKLDEEVKMISAEAPVLFAKAAXIFIHELT 467
KKIMK + EV M++AEAPVL +KA + I +LT
Sbjct: 70 KKIMKSNPEVNMVTAEAPVLISKACEMLILDLT 102
>At5g38140.1 68418.m04596 histone-like transcription factor
(CBF/NF-Y) family protein similar to CCAAT-binding
transcription factor subunit AAB-1 (GI:2583171)
[Neurospora crassa]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 195
Score = 51.2 bits (117), Expect = 5e-07
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Frame = +3
Query: 297 KVLEDIQKVNSEDFKTQA-LPLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHELTXP 473
KV + Q+ +F Q LPL+R++KI+K D EVK IS + P LF+KA FI E+T
Sbjct: 49 KVFWNNQREQLGNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLR 108
Query: 474 XLVRIR---RKIKGRTSAAQASISEQLXFD---NRDPFGXPGIXHSG 596
+ + R+ R QA + +D +R PFG + H G
Sbjct: 109 AWMHTQSCTRETIRRCDIFQA-VKNSGTYDFLIDRVPFGPHCVTHQG 154
>At3g12480.1 68416.m01553 transcription factor, putative
Length = 293
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 354 PLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHEL 464
P ARIKKIM+ DE+V I+ PVL +K+ +F+ +L
Sbjct: 10 PAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDL 46
>At5g43250.1 68418.m05285 transcription factor, putative similar to
heme activated protein GI:6289057 from (Arabidopsis
thaliana) GI:14577940 CCAAT-binding protein subunit HAP5
{Hypocrea jecorina} similar to Transcription factor
GB:CAA74053 GI:2398533 from [Arabidopsis thaliana]
similarity to transcription factor Hap5a similar to
transcription factor Hap5a [Arabidopsis
thaliana](GI:6523090)
Length = 130
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 354 PLARIKKIMKLDEEVKMISAEAPVLFAKAAXIFIHEL 464
P+ R+KKIMKLD+++ I++EA + + +F+H L
Sbjct: 13 PIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFL 49
>At1g60440.1 68414.m06804 eukaryotic pantothenate kinase family
protein similar to pantothenate kinase GI:4191500 from
[Aspergillus nidulans]; contains Pfam profile PF03630:
Fumble
Length = 383
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 247 TGNISVHFFGRGNRRCLFGRHKEAHGHFVVFSTNFTRQTH 128
T +++VHF+ RG + +F RH+ G F T++ Q+H
Sbjct: 301 TISVAVHFWSRGEAKAMFLRHEGFLGALGAF-TSYNDQSH 339
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 264 GGAETLQQFWD-KVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEV--KMISAEAPVLFA 434
GG E WD K +E ++K N EDF+ Q + I+++ + E+ K+ E + +A
Sbjct: 682 GGMEAKSNKWDDKKIEGLKK-NKEDFEQQLENIGSIREMQMKESEISGKISGLEKKIQYA 740
Query: 435 K 437
+
Sbjct: 741 E 741
>At3g09580.1 68416.m01138 amine oxidase family protein low
similarity to SP|P28553 Phytoene dehydrogenase,
chloroplast precursor (Phytoene desaturase) from Glycine
max; contains Pfam profile PF01593 amine oxidase,
flavin-containing
Length = 477
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 270 AETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVL 428
A+ L+ FWD V + S K + L R + ++K DEE+ + E P +
Sbjct: 139 ADPLRHFWDSVASLANPIGSVVDKG-LIALTRARVLIKSDEEILTAADEVPTI 190
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 222 KKWTLMLPVRSLR*GGAETLQQFWDKVLEDIQKVNSE 332
K+W+L VRSL G AET + W + L +I K E
Sbjct: 610 KEWSL--DVRSLSVGAAETALEEWMRTLANIIKRQEE 644
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 329 RRLQDPSFAVGSHQEDHETRRGGEDDISRGTGLI 430
R L+ F + + + D E +R E+DI G GL+
Sbjct: 464 RMLKQGGFYMNNERVDDENKRVDEEDIVEGRGLV 497
>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1101
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +3
Query: 174 CASLCLPNKQRRLPR--PKKWTLMLPVRSLR*GGAETLQQFWDKVLEDIQKVNSEDFKTQ 347
CA +PN+ + +P+ K W+ + + A + LED+++ E+ ++
Sbjct: 259 CAKF-IPNETKHMPQRISKVWSRKISIGGWEPVDAAAAIELIKNRLEDVKEFAYENGWSK 317
Query: 348 ALPLARIKKIMKLDEEVKMI 407
PLA +K KL +E++++
Sbjct: 318 DWPLAADEKRSKLLKEIQLL 337
>At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 750
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 267 GAETLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKL--DEEVKMISAEAPVLFAKA 440
G ++ ++ +VL ++++ KTQ PL+ IK ++KL EE+K + +
Sbjct: 195 GGDSTKESVPQVLSVLERIRLN--KTQETPLSTIKNVLKLSNQEELKFTRENLKKIEERL 252
Query: 441 AXIFI 455
+FI
Sbjct: 253 KNVFI 257
>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1131
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 291 WDKVLEDIQKVNSEDFKTQALPLARIKKIMK 383
W K L D+ + EDFK IKKI +
Sbjct: 144 WSKALTDVSNIAGEDFKKWDNEANMIKKIAR 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,832,393
Number of Sequences: 28952
Number of extensions: 215400
Number of successful extensions: 541
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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