Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30440.Seq
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39990.1 68415.m04914 eukaryotic translation initiation facto...    81   6e-16
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    74   1e-13
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    73   2e-13
At1g10840.1 68414.m01246 eukaryotic translation initiation facto...    49   3e-06
At5g01240.2 68418.m00032 amino acid permease, putative strong si...    30   1.2  
At5g01240.1 68418.m00031 amino acid permease, putative strong si...    30   1.2  
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ...    28   4.8  

>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
           subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
           SP|O04202 Eukaryotic translation initiation factor 3
           subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 293

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 34/86 (39%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 177
           ++ ++HP+V+F + D + RR   + RVIGTLLG+    G V++ N + VPH E +DQV  
Sbjct: 26  LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85

Query: 178 ELNYAMDVYELNRRVNSSESIVGWWA 255
           +++Y  ++   + +VNS E+IVGW++
Sbjct: 86  DIDYHHNMLASHLKVNSKETIVGWYS 111



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 26/81 (32%), Positives = 42/81 (51%)
 Frame = +3

Query: 255 TGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTP 434
           TG  V   SS+IH++Y+R    P+H+T+DT    G   ++A+V   L + + +    F  
Sbjct: 112 TGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQE 171

Query: 435 VDVTLTCYEPEIVGLQVCQKT 497
           + V L   + E VG  V + T
Sbjct: 172 IPVDLRMVDAERVGFDVLKAT 192


>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
           V VHP+VL  IVD Y R   DS  RV+G LLG+S +GVV+VTN + VP +E         
Sbjct: 17  VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76

Query: 175 AELNYAMDVYELNRRVNSSESIVGWWALAMK 267
            + NY   ++ + +R+N+ E +VGW++   K
Sbjct: 77  LDHNYHESMFHMFKRINAKEHVVGWYSTGPK 107


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
           V VHP+VL  IVD Y R   D S RV+G LLG+S +G V+VTN + VP +E         
Sbjct: 17  VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76

Query: 175 AELNYAMDVYELNRRVNSSESIVGWWALAMK 267
            + NY   ++ + +R+N+ E IVGW++   K
Sbjct: 77  LDHNYHESMFHMFKRINAKEHIVGWYSTGPK 107


>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 337

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +1

Query: 79  VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 252
           V G LLG     V+EVTNCF  P ++  +++EA+  NY +++    R VN   + VGW+
Sbjct: 47  VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105


>At5g01240.2 68418.m00032 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 408

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
           D++V L+ IH+ I F F    ++FVW  +A+G  H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271


>At5g01240.1 68418.m00031 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 488

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
           D++V L+ IH+ I F F    ++FVW  +A+G  H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351


>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 469

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 344 FAGWRSNGFTCI-CLCTIGSAKWKARL 421
           FAG+RS     + CLC +G A W  RL
Sbjct: 332 FAGYRSEIVRSVFCLCPLGWAPWSPRL 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,408,616
Number of Sequences: 28952
Number of extensions: 291289
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)