Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30438.Seq
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    62   1e-10
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    36   0.005
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    31   0.27 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   4.4  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   5.8  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   7.7  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)
 Frame = -2

Query: 755 KENVFTIPKHLSITRIGMSPIFGLVIIRNNYXLALGLLVFAGITDLLDGWIARNWKGQST 576
           +EN+FT+P  L+ +R+  +P+   + I +    A    ++AG TDL+DG+IAR +   S 
Sbjct: 395 RENIFTLPNLLTFSRLLSAPLIAYLYIYDYTKAAACFFLYAGFTDLVDGYIARKFDLGSI 454

Query: 575 KMGSFLDPMADKVLVATLFISLIGR 501
             G+ LDP+ADK L+  L I L  R
Sbjct: 455 -AGTVLDPLADKTLMTCLTICLAVR 478



 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 28/58 (48%), Positives = 39/58 (67%)
 Frame = -1

Query: 504 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLSRYFDVTHATAQLAPTFISKV 331
           ++ +P++L  LI+GRD+ LV A   +RY SLP P+T  R+FD    T +L PT ISKV
Sbjct: 478 RETMPLTLASLIIGRDVLLVSAVSYLRYKSLPAPKTFRRFFDFAIPTTELKPTRISKV 535


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = -2

Query: 656 ALGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKV 537
           A+  + FA   D LDG +AR W+G+S+ MG  LD +AD +
Sbjct: 81  AMYFMPFALFFDFLDGKVAR-WRGKSSLMGQELDSLADLI 119


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 641 VFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 510
           +++ + D  DGW AR    Q+T  G+ LD + D+   + L   L
Sbjct: 60  LYSSLLDAFDGWAARKLH-QATNFGAILDMVTDRCATSCLLCFL 102


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 325  SCSTSIGRHYAGVPSFWLC*SSSMKVLCGITAASTIVSAVSY 200
            S   SI R +A +P      S + ++LCG+ AAS   + + Y
Sbjct: 1240 SLKRSICRRFAVIPKEHDINSGNAEILCGVIAASLYPNILRY 1281


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 752 ENVFTIPKHLSITRIGMSPIFGLV 681
           EN  T+P HLS  RI  +  FG+V
Sbjct: 587 ENSCTLPDHLSFQRIQENIYFGIV 610


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 326 VFTLLIKVGASCAVACVTSKYLLNVRGGGKLIYRMTNPATTNAISRPTISS 478
           +F+LL K+G + +  CV        R G   I+++   ATT +I    I+S
Sbjct: 213 IFSLLSKIGPNLSSVCVQYPMPELSRSGLDCIFQLCPNATTISIPANYITS 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,502
Number of Sequences: 5004
Number of extensions: 68653
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)