Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30438.Seq
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    69   6e-12
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    50   3e-06
01_06_1437 - 37358912-37359226                                         29   4.6  

>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 32/84 (38%), Positives = 52/84 (61%)
 Frame = -2

Query: 758 GKENVFTIPKHLSITRIGMSPIFGLVIIRNNYXLALGLLVFAGITDLLDGWIARNWKGQS 579
           G+E    +P  +SI R+   P+ G +I+   Y  A G L  +G +D LDG++AR   G +
Sbjct: 130 GRERFLNLPNLVSIGRMASGPVIGWMIVNEWYLPAFGTLALSGASDWLDGFLARKM-GIN 188

Query: 578 TKMGSFLDPMADKVLVATLFISLI 507
           +  GS+LDP+ADKVL+  + I+++
Sbjct: 189 SVFGSYLDPLADKVLIGCVAIAMV 212



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = -1

Query: 504 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRY--FDVTHATAQLAPTFISK 334
           +DL+   L  L+V RD+ LV      R  SL     + S +   D  H   ++ P FISK
Sbjct: 214 KDLLHPGLVGLVVVRDLLLVGGAVYKRASSLGWKWNSWSDFVNLDAIHRE-KVKPLFISK 272

Query: 333 VNTAVQLLLVGTTLASPVFG 274
           VNT  QL+LV   L  P FG
Sbjct: 273 VNTVFQLMLVAAALLQPEFG 292


>03_02_0594 -
           9695616-9696042,9696646-9697260,9697410-9697717,
           9700145-9700235,9700698-9700759,9701256-9702962,
           9703789-9703870,9703972-9704057,9704855-9704968,
           9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
 Frame = -2

Query: 746 VFTIPKHLSITRIGMSPIFGLVIIRNNYXLAL---GLLVFAGITDLLDGWIARNWKGQST 576
           + T+P  L+I R+   P+            A    G+ + A +TD LDG+IAR  +   T
Sbjct: 134 LLTLPTVLTIGRVAAVPLLISTFYMEGPWAATATTGIFLAAAVTDWLDGYIARKMQ-LGT 192

Query: 575 KMGSFLDPMADKVLVATLFISL 510
             G+FLDP+ADK++VA   + L
Sbjct: 193 PFGAFLDPVADKLMVAATLVLL 214


>01_06_1437 - 37358912-37359226
          Length = 104

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 411 PPPRTLSRYFDVTHATAQLAPTFI 340
           PPPR L R   + H++ +L P F+
Sbjct: 60  PPPRALDRLISLRHSSLELLPLFL 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,235,759
Number of Sequences: 37544
Number of extensions: 400278
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)