Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30438.Seq
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase fam...    56   3e-08
At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,...    49   3e-06
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ...    49   3e-06
At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol 3-phosphat...    37   0.015
At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol 3-phosphat...    37   0.015
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    30   2.2  
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    30   2.2  
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    28   8.9  

>At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase family
           protein similar to SP|Q07560 Cardiolipin synthetase (EC
           2.7.8.-) {Saccharomyces cerevisiae; contains Pfam
           profile PF01066: CDP-alcohol phosphatidyltransferase
          Length = 341

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 32/93 (34%), Positives = 52/93 (55%)
 Frame = -2

Query: 785 SKERFEXSVGKENVFTIPKHLSITRIGMSPIFGLVIIRNNYXLALGLLVFAGITDLLDGW 606
           SKE     + K  V  +P  +S+ R+   P+   +I    Y  A   L  +G +D LDG+
Sbjct: 129 SKEEDGGKLVKSFV-NVPNMISMARLVSGPVLWWMISNEMYSSAFLGLAVSGASDWLDGY 187

Query: 605 IARNWKGQSTKMGSFLDPMADKVLVATLFISLI 507
           +AR  K  S  +GS+LDP+ADKVL+  + ++++
Sbjct: 188 VARRMKINSV-VGSYLDPLADKVLIGCVAVAMV 219



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = -1

Query: 504 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRYFDVTHATAQ-LAPTFISKV 331
           +DL+   L  +++ RD+ALV     +R ++L    +T S +F++  ++ Q + P FISKV
Sbjct: 221 KDLLHPGLVGIVLLRDVALVGGAVYLRALNLDWKWKTWSDFFNLDGSSPQKVEPLFISKV 280

Query: 330 NTAVQLLLVGTTLASPVFGYVD 265
           NT  QL LV   +  P FG  D
Sbjct: 281 NTVFQLTLVAGAILQPEFGNPD 302


>At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,
           putative similar to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana];
           contains non-consensus CG acceptor splice site at exon 4
          Length = 233

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
 Frame = -2

Query: 746 VFTIPKHLSITRIGMSPIFGLVIIRNNYX---LALGLLVFAGITDLLDGWIARNWKGQST 576
           V T+P  L++ R+   PI       + +        + + A ITD LDG+IAR  +   +
Sbjct: 40  VITLPTVLTLGRVAAVPILVATFYVDCWWGRTATTSIFIAAAITDWLDGYIARKMR-LGS 98

Query: 575 KMGSFLDPMADKVLVATLFISL 510
           + G+FLDP+ADK++VA   I L
Sbjct: 99  EFGAFLDPVADKLMVAATLILL 120


>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
           (PGS1) identical to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana]
          Length = 296

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
 Frame = -2

Query: 764 SVGKENVFTIPKHLSITRIGMSPIFGLVIIRNNYX---LALGLLVFAGITDLLDGWIARN 594
           S     V T+P  L++ R+   P+       +++        + + A ITD LDG++AR 
Sbjct: 98  SQSSSKVLTLPTVLTLGRVAAVPLLVATFYVDSWWGTTATTSIFIAAAITDWLDGYLARK 157

Query: 593 WKGQSTKMGSFLDPMADKVLVATLFISL 510
            +  S   G+FLDP+ADK++VA   I L
Sbjct: 158 MRLGSA-FGAFLDPVADKLMVAATLILL 184


>At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase, putative /
           phosphatidylinositol synthase, putative similar to
           phosphatidylinositol synthase (PIS1) - Arabidopsis
           thaliana, PID:e1313354 [gi:3367632]
          Length = 225

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = -2

Query: 737 IPKHLSITRIGMSPIFGLVIIRNNYXLALGLLVFAGITDLLDGWIARNWKGQSTKMGSFL 558
           IP  +   R+ ++ I   V   N    +L L  F+   D +DGW AR +   ST  G+ L
Sbjct: 15  IPNIVGYMRVLLNCIAFSVCFSNKTLFSL-LYFFSFCCDAVDGWCARKFNQVST-FGAVL 72

Query: 557 DPMADKVLVATLFI--SLIGRTSYLF 486
           D + D+V  A L +  S I R S +F
Sbjct: 73  DMVTDRVSTACLLVILSQIYRPSLVF 98


>At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase / phosphatidylinositol
           synthase (PIS1) identical to phosphatidylinositol
           synthase (PIS1) GB:AJ000539 [gi:3367632]
          Length = 227

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -2

Query: 737 IPKHLSITRIGMSPIFGLVIIRNNYXLALGLLVFAGITDLLDGWIARNWKGQSTKMGSFL 558
           IP  +   R+ ++ +   V   N    ++ L  F+   D +DGW+AR +   ST  G+ L
Sbjct: 18  IPNIVGYMRVLLNCVAFAVCFSNKPLFSV-LYFFSFCCDAVDGWVARRFNQVST-FGAVL 75

Query: 557 DPMADKVLVATLFI--SLIGRTSYLF 486
           D + D+V  A L +  S I R S +F
Sbjct: 76  DMVTDRVSTACLLVILSQIYRPSLVF 101


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 23  LIIYLHYFV*LIK*TVLLMVNKILKTIKNNLEMGIEIFHNTSRYSYFF 166
           L++  +YFV + K   L+M   I  T+     MGI+I H  S  S  F
Sbjct: 536 LLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALF 583


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 346 SRCKLCGCVCYIEIPTQRSRWW*AYISNDKSSHN 447
           S C +CG   +    T R+ WW A ++  +S HN
Sbjct: 214 SACHICGSQAWQTNDTSRNVWWLALLTMGESWHN 247


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 414 LPPPRTLSRYFDVTHATAQLAPTFISKVNTAVQLLL 307
           L PP++LSR+ D+     Q+ P F   ++  V+ L+
Sbjct: 632 LYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEALV 667


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,513
Number of Sequences: 28952
Number of extensions: 336305
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)