Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30437.Seq
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    28   2.0  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    28   2.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.7  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   6.2  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 559 LLYTLWLLNVKSCDFEADYVT--LTFGDLL 642
           LL TLW+LN++  D  AD VT  L FG  L
Sbjct: 701 LLNTLWILNMRRSDGIADPVTVNLKFGTTL 730


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 658 VPHTNLTSHQMSALHNQLQNHMILHLIAIM 569
           + +TN T H++S L+  +QN     L+A++
Sbjct: 412 ISNTNATQHKLSTLYRGMQNKCTRRLLAVI 441


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 775 TSNHDSP*GSTKPFFPT*DIDWQLPQRFSID 683
           T+N D P  S+KP  P  D++    QR ++D
Sbjct: 319 TANSDEPASSSKPAKPLTDLNRAFSQRLNLD 349


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 613 NQLQNHMILHLIAIMCTEVKNTLHNYVK-LTPAV*EKWKFSIPTKLKFKID 464
           N+L+N  +     I  T++KN LH Y K +     E W  + P   + K++
Sbjct: 626 NELRNLPMASSAIIWATQLKNRLHEYTKNINIIFGEDWN-NFPDGFELKVE 675


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 420 NCSELHIKRSV*CLLSILNLSFVGIENFHF 509
           NC+ +H+KR+    L  +N SF+  E  ++
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNY 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,077
Number of Sequences: 5004
Number of extensions: 68972
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)