Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30437.Seq
         (887 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)                   28   8.8  

>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 649 TNLTSHQMSALHNQLQNHMILHLIAIMCTEVKNTLHNYVKLT 524
           T + +H ++ + N     M  H +  MC   +NT+ N+   T
Sbjct: 98  TTMCNHTLNTMCNHTLTTMCNHTLTTMCNHTRNTMCNHTLTT 139



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 649 TNLTSHQMSALHNQLQNHMILHLIAIMCTEVKNTLHNYVKLT 524
           T + +H ++ + N     M  H +  MC     T+HN+   T
Sbjct: 138 TTMCNHTLTIMCNHTLTTMCNHTLTTMCNPALTTMHNHTLTT 179


>SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)
          Length = 653

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -2

Query: 622 ALHNQLQNHMILHLIAIMCTEVKNTL 545
           A+ NQ ++ +ILHL+A+MC ++  T+
Sbjct: 318 AVANQKRSLLILHLVALMCEKLGPTI 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,360,778
Number of Sequences: 59808
Number of extensions: 478587
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)