Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30435.Seq
         (886 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40226-1|AAB01760.1|   76|Drosophila melanogaster L43 protein.         65   1e-10
AE013599-3176|AAF46708.1|   76|Drosophila melanogaster CG10071-P...    65   1e-10
AE013599-3175|AAM70864.1|   76|Drosophila melanogaster CG10071-P...    65   1e-10
AE013599-3174|AAM70863.1|   76|Drosophila melanogaster CG10071-P...    65   1e-10
AY075553-1|AAL68360.1|   56|Drosophila melanogaster RH58777p pro...    63   6e-10

>U40226-1|AAB01760.1|   76|Drosophila melanogaster L43 protein.
          Length = 76

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKGFARRVT*SQPSNSRGR 344
           MAKSKNHTNHNQN+KAHRNGIK+P + RHE  L     F   + +AR+   S+  + + R
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREESVK-R 59

Query: 345 LREKL-PEKQRPR 380
             E++  +K +P+
Sbjct: 60  YNERIASQKGKPK 72


>AE013599-3176|AAF46708.1|   76|Drosophila melanogaster CG10071-PC,
           isoform C protein.
          Length = 76

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKGFARRVT*SQPSNSRGR 344
           MAKSKNHTNHNQN+KAHRNGIK+P + RHE  L     F   + +AR+   S+  + + R
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREESVK-R 59

Query: 345 LREKL-PEKQRPR 380
             E++  +K +P+
Sbjct: 60  YNERIASQKGKPK 72


>AE013599-3175|AAM70864.1|   76|Drosophila melanogaster CG10071-PB,
           isoform B protein.
          Length = 76

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKGFARRVT*SQPSNSRGR 344
           MAKSKNHTNHNQN+KAHRNGIK+P + RHE  L     F   + +AR+   S+  + + R
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREESVK-R 59

Query: 345 LREKL-PEKQRPR 380
             E++  +K +P+
Sbjct: 60  YNERIASQKGKPK 72


>AE013599-3174|AAM70863.1|   76|Drosophila melanogaster CG10071-PA,
           isoform A protein.
          Length = 76

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKGFARRVT*SQPSNSRGR 344
           MAKSKNHTNHNQN+KAHRNGIK+P + RHE  L     F   + +AR+   S+  + + R
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREESVK-R 59

Query: 345 LREKL-PEKQRPR 380
             E++  +K +P+
Sbjct: 60  YNERIASQKGKPK 72


>AY075553-1|AAL68360.1|   56|Drosophila melanogaster RH58777p
           protein.
          Length = 56

 Score = 62.9 bits (146), Expect = 6e-10
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPL 263
           MAKSKNHTNHNQN+KAHRNGIK+P + RHE  L
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTL 33


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,737,750
Number of Sequences: 53049
Number of extensions: 688376
Number of successful extensions: 1673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4311772920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)