Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30433.Seq
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 97 4e-21
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 94 2e-20
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 31 0.30
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 2.8
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 3.6
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac... 27 3.6
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 8.4
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 8.4
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 96.7 bits (230), Expect = 4e-21
Identities = 41/62 (66%), Positives = 51/62 (82%)
Frame = +2
Query: 65 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 244
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 245 NG 250
NG
Sbjct: 66 NG 67
Score = 68.9 bits (161), Expect = 9e-13
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +1
Query: 241 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 420
P + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 421 SQE 429
SQE
Sbjct: 125 SQE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = +2
Query: 65 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 244
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 245 NG 250
NG
Sbjct: 66 NG 67
Score = 69.3 bits (162), Expect = 7e-13
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +1
Query: 241 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 420
P + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 421 SQE 429
SQE
Sbjct: 125 SQE 127
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 30.7 bits (66), Expect = 0.30
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 485 PVPNSPYSSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIAL 649
P+P P S ++ H + + +L N I+L ++PLSP A+ P+PI L
Sbjct: 170 PLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRL 229
Query: 650 PNSCA 664
+S A
Sbjct: 230 YSSDA 234
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -1
Query: 139 TPIPLKFV--IAIRLMPDKSLRP 77
TP+P+KFV IA+ MP +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 405 RIRHSDAELLGSFHDQLPLLRRDTMSDLCAVL 310
R+ HSD + + +F DQ +RR + LC +L
Sbjct: 148 RLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPAC1250.04c |atl1||alkyltransferase-like protein
Atl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 13 VSKRNIQDGYKTCLQADNRQKEDEEIYQASIG 108
+SKR+I G + Q D ++E EIYQ S+G
Sbjct: 66 ISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 247 WIPKVLVHNVKEL-EILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 423
W+ +VL + E+ EI +Q A + G +SKK ++ E ++LSI T ++
Sbjct: 579 WMARVLGDDKAEISEISKVQTSIKSATMIKGSTSKKVAVVSENNRRLSIFDTRSSEFSEK 638
Query: 424 QE 429
+E
Sbjct: 639 EE 640
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 673 PFXCATVGKGDRCGPLRYYASWRKGDV 593
P C V G R GP Y +W+ DV
Sbjct: 392 PKVCLFVRNGARLGPTSIYHAWKAFDV 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,616
Number of Sequences: 5004
Number of extensions: 70375
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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