Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30433.Seq
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 105 5e-23
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 101 1e-21
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 101 1e-21
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 95 9e-20
09_02_0036 + 3217163-3217584,3217752-3218322 30 2.2
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 28 8.8
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 105 bits (252), Expect = 5e-23
Identities = 49/77 (63%), Positives = 60/77 (77%)
Frame = +2
Query: 23 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 202
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 203 IGYGSNKKTRHMLPNGF 253
IGYGS+KKTRH LPN F
Sbjct: 378 IGYGSDKKTRHYLPNKF 394
Score = 35.1 bits (77), Expect = 0.077
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNR 309
Y P K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 101 bits (241), Expect = 1e-21
Identities = 48/73 (65%), Positives = 57/73 (78%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 215 SNKKTRHMLPNGF 253
S+KKTRH LPN F
Sbjct: 60 SDKKTRHYLPNKF 72
Score = 75.8 bits (178), Expect = 4e-14
Identities = 36/55 (65%), Positives = 41/55 (74%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 399
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 101 bits (241), Expect = 1e-21
Identities = 48/73 (65%), Positives = 57/73 (78%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 215 SNKKTRHMLPNGF 253
S+KKTRH LPN F
Sbjct: 60 SDKKTRHYLPNKF 72
Score = 94.7 bits (225), Expect = 9e-20
Identities = 47/67 (70%), Positives = 51/67 (76%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 414
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 126
Query: 415 LRSQENE 435
LRSQE+E
Sbjct: 127 LRSQEDE 133
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 94.7 bits (225), Expect = 9e-20
Identities = 47/67 (70%), Positives = 51/67 (76%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 414
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193
Query: 415 LRSQENE 435
LRSQE+E
Sbjct: 194 LRSQEDE 200
Score = 74.9 bits (176), Expect = 8e-14
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +2
Query: 131 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGF 253
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKF 139
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 127
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 515 ITIHWPSFYNVV-TGKTLALPNLIALQH 595
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +2
Query: 470 NSRGGPVPNSPYSSRITIHWPSF----YNVVTGKTLALPNL 580
+ R GP+ +S SSR ++ WP+ ++ + ++LALP L
Sbjct: 31 DGRTGPLASSKVSSRESVRWPTVGRYKVDIASLESLALPEL 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,339,397
Number of Sequences: 37544
Number of extensions: 517440
Number of successful extensions: 1394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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