Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30433.Seq
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    93   3e-19
Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 37/63 (58%), Positives = 52/63 (82%)
 Frame = +2

Query: 65  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 244
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 245 NGF 253
           NG+
Sbjct: 71  NGY 73



 Score = 81.4 bits (192), Expect = 8e-16
 Identities = 39/65 (60%), Positives = 51/65 (78%)
 Frame = +1

Query: 241 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 420
           P    KVLV NVK+L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN  ARLR
Sbjct: 70  PNGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLR 129

Query: 421 SQENE 435
           ++E+E
Sbjct: 130 TEESE 134


>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 481 GPGTQFAL**SYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 615
           G  T++A+   +YN L     +  W N  V +L  L   P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 481 GPGTQFAL**SYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 615
           G  T++A+   +YN L     +  W N  V +L  L   P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273


>AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical
           protein Y43F4B.2 protein.
          Length = 629

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = +2

Query: 497 SPYSSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAXEWR 676
           SP+    T + P ++ +   K+  L +L+  + I  SP G+  KR AP+ + N+ +   R
Sbjct: 145 SPFEDEETPYHPDWF-LTNSKSHVLRSLMHYRPIANSPRGISTKRGAPLVIFNNQSYRPR 203

Query: 677 MAIVSVNILLK 709
             + + +I+ +
Sbjct: 204 ETLKNGDIVAR 214


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 435 INIIVLXXXXXXTRGGARYPIRPIVVVLQF-TGRRFTTS*LGKP 563
           INII        TR  AR P  PIVV+ Q  + RR +   LG+P
Sbjct: 546 INIIECETFLKETRSPARTPATPIVVINQTPSSRRSSQDLLGEP 589


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 435 INIIVLXXXXXXTRGGARYPIRPIVVVLQF-TGRRFTTS*LGKP 563
           INII        TR  AR P  PIVV+ Q  + RR +   LG+P
Sbjct: 546 INIIECETFLKETRSPARTPATPIVVINQTPSSRRSSQDLLGEP 589


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,893,885
Number of Sequences: 27780
Number of extensions: 411896
Number of successful extensions: 1020
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)