Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30433.Seq
         (904 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)           103   2e-22
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)           103   2e-22
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo...   103   2e-22
At5g41840.1 68418.m05095 F-box family protein contains F-box dom...    33   0.34 
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot...    29   5.6  
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica...    28   7.4  

>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  103 bits (246), Expect = 2e-22
 Identities = 46/73 (63%), Positives = 59/73 (80%)
 Frame = +2

Query: 35  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 215 SNKKTRHMLPNGF 253
           S+KKTRH LPNGF
Sbjct: 60  SDKKTRHYLPNGF 72



 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 42/67 (62%), Positives = 49/67 (73%)
 Frame = +1

Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 414
           Y P    K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N   R
Sbjct: 67  YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126

Query: 415 LRSQENE 435
           LRSQE+E
Sbjct: 127 LRSQEDE 133


>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  103 bits (246), Expect = 2e-22
 Identities = 46/73 (63%), Positives = 59/73 (80%)
 Frame = +2

Query: 35  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 215 SNKKTRHMLPNGF 253
           S+KKTRH LPNGF
Sbjct: 60  SDKKTRHYLPNGF 72



 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 42/67 (62%), Positives = 49/67 (73%)
 Frame = +1

Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 414
           Y P    K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N   R
Sbjct: 67  YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126

Query: 415 LRSQENE 435
           LRSQE+E
Sbjct: 127 LRSQEDE 133


>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
           ribosomal protein L32, human, PIR1:R5HU32
          Length = 133

 Score =  103 bits (246), Expect = 2e-22
 Identities = 46/73 (63%), Positives = 59/73 (80%)
 Frame = +2

Query: 35  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 215 SNKKTRHMLPNGF 253
           S+KKTRH LPNGF
Sbjct: 60  SDKKTRHYLPNGF 72



 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 45/67 (67%), Positives = 50/67 (74%)
 Frame = +1

Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 414
           Y P    K +VHN  ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN  AR
Sbjct: 67  YLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLAR 126

Query: 415 LRSQENE 435
           LRSQE+E
Sbjct: 127 LRSQEDE 133


>At5g41840.1 68418.m05095 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 540

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 226 DPSYAPKWIPKVLVHNVKELEILMMQNRKYC 318
           D S+  +WIPKVL   V ++++ +  +R YC
Sbjct: 110 DQSWVLEWIPKVLKRGVLDIDLHITSSRNYC 140


>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
           similar to Anther-specific proline-rich proteins
           SP|P40603 SP|P40602 from {Arabidopsis thaliana};
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 385

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 92  IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 247
           +R Q D Y K++R WR   G +   +R  +  YL   I  GSN  +   L N
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSNDYSSIFLTN 194


>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
           domain-containing protein / HNH endonuclease
           domain-containing protein similar to HepA-related
           protein HARP [Homo sapiens] GI:6693791; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain, PF01844: HNH
           endonuclease
          Length = 1190

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 202 HWLRFQQEDPSYAPKWIPKVLVHNVKELEIL 294
           H +   Q++P+Y P+W PKV+V + K L+ L
Sbjct: 278 HLVFGHQDNPAYLPRW-PKVVVISYKMLQHL 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,984,368
Number of Sequences: 28952
Number of extensions: 388261
Number of successful extensions: 982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)