Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30432.Seq
         (857 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   1.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   4.1  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   4.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   4.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   9.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   9.4  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 226 HREGLPWHLPSARCLHPKGESVEEAPFRDLEVDG 125
           HRE + W + + R ++ +GES   + +R L  +G
Sbjct: 290 HREDVRWVMIALRQMYDRGESKGSSCYRLLSRNG 323


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 279 VSDVACNDFTHFLSDCSDLSVLGVXVLRWL 368
           V+ V C  F   LS  SD +  G   L WL
Sbjct: 397 VTKVTCELFQATLSSSSDTNRFGTSGLAWL 426


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 165 LSPFGCKHRAEGRCHGRPSRCP 230
           L P+    R   RCHG    CP
Sbjct: 336 LWPYTMYFRMPHRCHGNLQSCP 357


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 477 GWLKNGRLSS 448
           GWLK G+LSS
Sbjct: 124 GWLKKGKLSS 133


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 367 SRSPYW*NQCRRHVERIHRLSSHQC 441
           +  P+  ++CR    R H L  H+C
Sbjct: 243 NEKPFECDKCRGRFRRRHHLVHHKC 267


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +1

Query: 94  PLASTAFAVKFHQLRDLETGPLQHFHLSDANIAQRVDAMAGLLDVLGNGVRNQLFTTSLS 273
           P  S +   K     ++E  P   +  +D++  +       + DV+  G R   F T+L 
Sbjct: 205 PEKSASIPKKKEVKEEIEDEPDHKWKKNDSSKKKTRYYYRSVDDVIEKGKRPGAFRTTLG 264

Query: 274 SELVTSRVM 300
           SEL   +V+
Sbjct: 265 SELSKVKVI 273


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 183 CIRKVKVLKRPRFEISKLME 124
           C+R     KRP+FE S   E
Sbjct: 192 CLRTCSSAKRPKFENSSCDE 211


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 216 PSRCPWQWSQESTVHHLPEFRVSDVA 293
           P+R P++W ++++    P    +D A
Sbjct: 119 PARSPYEWIKKTSYQSQPNPEPADFA 144


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 216 PSRCPWQWSQESTVHHLPEFRVSDVA 293
           P+R P++W ++++    P    +D A
Sbjct: 119 PARSPYEWIKKTSYQSQPNPEPADFA 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,964
Number of Sequences: 336
Number of extensions: 4010
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)