Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30432.Seq
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 85 9e-17
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 82 5e-16
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 82 5e-16
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 30 2.7
01_06_1071 - 34289609-34292941 29 3.6
01_01_0540 + 3957622-3960903 29 3.6
08_02_0852 + 21877287-21877781 29 6.3
07_01_0355 + 2597592-2598280,2599150-2599426 29 6.3
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 28 8.3
08_02_0151 - 13287964-13288661,13289616-13289812,13290005-132905... 28 8.3
03_05_0019 + 19862171-19863049 28 8.3
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 84.6 bits (200), Expect = 9e-17
Identities = 39/69 (56%), Positives = 49/69 (71%)
Frame = -2
Query: 508 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTXTPSTLRS 329
GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++T +
Sbjct: 102 GMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQI 161
Query: 328 EQSERKCVK 302
Q RK V+
Sbjct: 162 RQIRRKMVE 170
Score = 60.9 bits (141), Expect = 1e-09
Identities = 25/46 (54%), Positives = 37/46 (80%)
Frame = -3
Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 118
+ IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 187 KFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
Score = 56.4 bits (130), Expect = 3e-08
Identities = 35/80 (43%), Positives = 43/80 (53%)
Frame = -3
Query: 750 PFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLADLQADIDAERS 571
PF +K + P + G + GLK RVFEVSLADLQ D D ++
Sbjct: 23 PFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QA 80
Query: 570 FRKFRLIAEYVQGRNVLCNF 511
+RK RL AE VQG+NVL NF
Sbjct: 81 YRKIRLRAEDVQGKNVLTNF 100
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = -1
Query: 737 KDXSDVKAPSMFSKRQVGTTLVXRPQGXKXAS 642
KD D+KAPS+F+ R +G TLV R QG K AS
Sbjct: 27 KDWYDIKAPSVFNVRNIGKTLVSRTQGTKIAS 58
Score = 35.1 bits (77), Expect = 0.072
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = -1
Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVVN 255
YAQ +Q+R IR+KM EI+ ++ +L+E+V+
Sbjct: 155 YAQASQIRQIRRKMVEIMANQASSCDLKELVS 186
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 82.2 bits (194), Expect = 5e-16
Identities = 38/69 (55%), Positives = 48/69 (69%)
Frame = -2
Query: 508 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTXTPSTLRS 329
GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++T +
Sbjct: 102 GMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQI 161
Query: 328 EQSERKCVK 302
Q RK V+
Sbjct: 162 RQIRRKMVE 170
Score = 60.9 bits (141), Expect = 1e-09
Identities = 25/46 (54%), Positives = 37/46 (80%)
Frame = -3
Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 118
+ IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 187 KFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
Score = 56.4 bits (130), Expect = 3e-08
Identities = 35/80 (43%), Positives = 43/80 (53%)
Frame = -3
Query: 750 PFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLADLQADIDAERS 571
PF +K + P + G + GLK RVFEVSLADLQ D D ++
Sbjct: 23 PFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QA 80
Query: 570 FRKFRLIAEYVQGRNVLCNF 511
+RK RL AE VQG+NVL NF
Sbjct: 81 YRKIRLRAEDVQGKNVLTNF 100
Score = 42.3 bits (95), Expect = 5e-04
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = -1
Query: 737 KDXSDVKAPSMFSKRQVGTTLVXRPQGXKXAS 642
KD D+KAPS+F+ R VG TLV R QG K AS
Sbjct: 27 KDWYDIKAPSVFNVRNVGKTLVSRTQGTKIAS 58
Score = 35.1 bits (77), Expect = 0.072
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = -1
Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVVN 255
YAQ +Q+R IR+KM EI+ ++ +L+E+V+
Sbjct: 155 YAQASQIRQIRRKMVEIMVNQASSCDLKELVS 186
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 82.2 bits (194), Expect = 5e-16
Identities = 38/69 (55%), Positives = 48/69 (69%)
Frame = -2
Query: 508 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTXTPSTLRS 329
GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++T +
Sbjct: 102 GMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQI 161
Query: 328 EQSERKCVK 302
Q RK V+
Sbjct: 162 RQIRRKMVE 170
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/46 (54%), Positives = 37/46 (80%)
Frame = -3
Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 118
+ IP+ I K+IEK+ I+PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 187 KFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232
Score = 57.6 bits (133), Expect = 1e-08
Identities = 36/80 (45%), Positives = 43/80 (53%)
Frame = -3
Query: 750 PFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLADLQADIDAERS 571
PF +K + P + G + GLK RVFEVSLADLQ D D ++
Sbjct: 23 PFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QA 80
Query: 570 FRKFRLIAEYVQGRNVLCNF 511
+RK RL AE VQGRNVL NF
Sbjct: 81 YRKVRLRAEDVQGRNVLTNF 100
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = -1
Query: 737 KDXSDVKAPSMFSKRQVGTTLVXRPQGXKXAS 642
KD D+KAP++FS R +G TLV R QG K AS
Sbjct: 27 KDWYDIKAPTVFSVRNIGKTLVSRTQGTKIAS 58
Score = 34.7 bits (76), Expect = 0.096
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -1
Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVVN 255
YAQ +Q+R IR+KM EI+ + +L+E+V+
Sbjct: 155 YAQASQIRQIRRKMVEIMANQASTCDLKELVS 186
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 809 RFPCFSDFNSHTIHFPDC-RPHSFAKDXSDVKAPSMFSK 696
RFPC + T+HF C R ++ SD+K P ++ K
Sbjct: 119 RFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRK 157
>01_06_1071 - 34289609-34292941
Length = 1110
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 216 PSRCPWQWSQESTVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGVXVLRWLKESL 380
PS W ES + LPE + + + + +++DC +L+ L V +L + +L
Sbjct: 867 PSTLRTLWISESGLESLPELQNNSCPSSPTSLYINDCPNLTSLRVGLLAYRPTAL 921
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 140 ISKRGLFNTFTFRMQT--SRRG*MPWQAFSMSLAMESGINCS 259
+S G++N RM RR PW+AFS +E G++CS
Sbjct: 651 LSLEGVYNPVDGRMYLIGCRRIQAPWRAFSAMGGVEEGMDCS 692
>08_02_0852 + 21877287-21877781
Length = 164
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 259 TTSLSSELVTSRVMISHIFFLIALT*VCWAXTSCVGSRS 375
TT+ SS L + R + + FL++ + W +S VGSR+
Sbjct: 10 TTTTSSLLGSFRTAVKKVRFLLSFSATRWILSSIVGSRA 48
>07_01_0355 + 2597592-2598280,2599150-2599426
Length = 321
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 474 IHLSLSVVRSMPGSCRAHYVLAHIRRLI*ICGKTFPRQCQLVD 602
+ +++++ R M GS RAH LA + R+ G T PR D
Sbjct: 156 VGVAVALRRVMVGSQRAHIALARLARIYRGDGSTMPRVATAAD 198
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 28.3 bits (60), Expect = 8.3
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 261 HLPEFRVSDVACNDFTHFLSDCSDLSVLGV---XVLRWLKESLLVKPMQKTRRTYPSVVF 431
+L FR+S +C F +S C +L L V L L ES+ +T +
Sbjct: 492 YLSYFRISHASCRAFPEEISHCWNLQALHVTYCRALTTLPESIGKLKKLRTLELSCLLDL 551
Query: 432 TSMLASMRVCHFL-TIHLSLSVVRSMPGS 515
S+ S+ CH L + L S +R +P S
Sbjct: 552 ESLPQSIGDCHNLQSFLLRGSGIREIPNS 580
>08_02_0151 -
13287964-13288661,13289616-13289812,13290005-13290523,
13290912-13291114
Length = 538
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 296 TRDVTNSELREVVNS*FLTPLPRTSRRPAMASTLCAMFASER 171
T D+ N LR + +T PR RP M L MFA R
Sbjct: 369 TNDIHNPTLRLMHKWIAMTQFPRGDMRPIMGDELIIMFAMVR 410
>03_05_0019 + 19862171-19863049
Length = 292
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 404 CLLHWFHQ*GLLEPTQDVYAQHTQVRAIRKKMCEIITRDVTNS 276
C W+ GL +P D+ H V+ +K+C ++ D S
Sbjct: 72 CGPDWYAMLGLPQPRSDLVTHHDAVKKQYRKLCLLVHPDKNTS 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,869,271
Number of Sequences: 37544
Number of extensions: 473204
Number of successful extensions: 1324
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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