Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30432.Seq
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          84   2e-16
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     34   0.17 
SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               30   2.8  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 44/79 (55%), Positives = 55/79 (69%), Gaps = 5/79 (6%)
 Frame = -3

Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH-----XXXXXXXXX 91
           +LIPDSI KDIEK+C  IYPL DV IRKVKVLK+P+F+I KLME+H              
Sbjct: 70  KLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDE 129

Query: 90  XGDKSERPEGYEPPVQESV 34
            G K +R EG+EPP+Q++V
Sbjct: 130 TGTKIDR-EGFEPPIQDTV 147



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = -2

Query: 457 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 353
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKT 36



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 21/32 (65%), Positives = 30/32 (93%)
 Frame = -1

Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVVN 255
           YA+HTQ++AIRKKM +IITR+V+ ++L+EVVN
Sbjct: 38  YAKHTQIKAIRKKMVDIITREVSTNDLKEVVN 69


>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
 Frame = -1

Query: 602 IYKLTLTR-KGLSANSD*SPNMCKDVMCSATSRHGPH------NR*AQVDG*KMADSH 450
           ++KLT+T  KGL+ +   + N+ KDV  +  +R GP       NR A++DG K +D H
Sbjct: 306 VFKLTVTDDKGLTGSGTVAVNVKKDVNQAPVARAGPDVVVHLPNRAAELDGSKSSDDH 363


>SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 267 PEFRVSDVACNDFTH-FLSDCSDL-SVLGVXVLRWLKESLLVKPMQKTRRTYPSVVFTSM 440
           P  R  D  C  FTH  +   S L S+  + ++   +   LVKPMQ  RR     V+ ++
Sbjct: 85  PTGRSGDWICKFFTHNAIMQISVLTSIFTLTIVSVERYHALVKPMQVGRRLTEDTVWYAV 144

Query: 441 LASMRVCHFLTI 476
           +AS      LT+
Sbjct: 145 IASWTASLILTV 156


>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 435 SMLASMRVCHFLTIHLSLSVVRS-MPGSCRAHYVLAHI 545
           S+++S  +CH + +HLS     S +  SC  H V+ H+
Sbjct: 98  SVISSSCICHIVIVHLSYRHRASVISSSCICHIVIVHL 135



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 435 SMLASMRVCHFLTIHLSLSVVRS-MPGSCRAHYVLAHI 545
           S+++S  +CH + +HLS     S +  SC  H V+ H+
Sbjct: 120 SVISSSCICHIVIVHLSYRHRASVISSSCICHIVIVHL 157


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 624  VFEVSLADLQADIDAERSFRKFRLIAEYVQ 535
            +F  + +D+QA+ +    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,960,077
Number of Sequences: 59808
Number of extensions: 532170
Number of successful extensions: 1305
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)