Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30432.Seq
         (857 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    93   7e-21
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.97 
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.1  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 93.5 bits (222), Expect = 7e-21
 Identities = 49/85 (57%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
 Frame = -3

Query: 270 QGGGEQLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 91
           +G  E+L+PDSIAKDIEKAC  +YPL DV IRKVKVLK+PRF++S LMELH         
Sbjct: 185 KGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAE 244

Query: 90  XGDKSE------RPEGYEPPVQESV 34
               +       RPEGYEPPVQ SV
Sbjct: 245 VSTGAASGVVVVRPEGYEPPVQASV 269



 Score = 92.7 bits (220), Expect = 1e-20
 Identities = 42/52 (80%), Positives = 47/52 (90%)
 Frame = -2

Query: 508 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 353
           GM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKT
Sbjct: 105 GMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKT 156



 Score = 77.8 bits (183), Expect = 4e-16
 Identities = 42/87 (48%), Positives = 52/87 (59%)
 Frame = -3

Query: 771 SLSRLSTPFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLADLQA 592
           S  ++  PF RK     + P   +   S       + G +    GLKGRVFEVSLADLQ 
Sbjct: 17  SKKKVVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQN 76

Query: 591 DIDAERSFRKFRLIAEYVQGRNVLCNF 511
           + DAERSFRKF+L+AE V GR+VL NF
Sbjct: 77  EPDAERSFRKFKLVAESVNGRDVLTNF 103



 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = -1

Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVV 258
           YAQH+Q++ IR KM  II R++T+++L+ VV
Sbjct: 158 YAQHSQIKNIRAKMTAIIKREITSTDLKGVV 188


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 202 LPSARCLHPKGESVEEAPFRDLEVDGT 122
           +P   C H  G ++E+A    LE DGT
Sbjct: 557 MPPKGCSHDDGPALEKAQLYQLESDGT 583


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +1

Query: 172 LSDANIAQRVDAMAGLLDVLGNGVRNQLF---TTSLSSEL-VTSRV 297
           L+ AN  QR++    L D++G+  RN++    TT   +E+ VTS V
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVLMYDTTDGPAEIAVTSGV 605


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 868,567
Number of Sequences: 2352
Number of extensions: 17110
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91372671
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)