Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30432.Seq
(857 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 108 8e-24
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 92 8e-19
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 92 8e-19
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 92 8e-19
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 92 8e-19
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 89 5e-18
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 108 bits (260), Expect = 8e-24
Identities = 88/250 (35%), Positives = 113/250 (45%), Gaps = 11/250 (4%)
Frame = -3
Query: 750 PFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLA-DLQADIDAER 574
PF RK + P Q + G KGRVFEVSL DLQ DID E
Sbjct: 24 PFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDIDPEH 83
Query: 573 SFRKFRLIAEYVQGRNVLCNFQAWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSA 394
SFRKFRLIAE VQ RNVLCNF +K + + ++ + +D + +
Sbjct: 84 SFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIE-AIVEAKTVDGYLLRVF 142
Query: 393 LVSXXXXXXXXXXXXXXAHSGQSNQKENV*NHYTRRH*L*TQGGGEQLIPDSIAKD---- 226
+ AH Q + + T G + + + +A D
Sbjct: 143 CIGFTAKDQQSQRKTCYAHESQVRKIRS--GRMTDIITNEVSGADLKQLVNKLALDSIAK 200
Query: 225 -IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE-RPEG--- 61
IEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE P+
Sbjct: 201 DIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAPKSTAL 260
Query: 60 -YEPPVQESV 34
+PPVQESV
Sbjct: 261 KVKPPVQESV 270
Score = 89.4 bits (212), Expect = 5e-18
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = -2
Query: 508 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 353
GMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKT
Sbjct: 106 GMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKT 157
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 92.3 bits (219), Expect = 8e-19
Identities = 48/79 (60%), Positives = 55/79 (69%), Gaps = 5/79 (6%)
Frame = -3
Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKS 76
+L DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH S
Sbjct: 190 KLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSS 249
Query: 75 E-----RPEGYEPPVQESV 34
E RPEGYEPPVQE+V
Sbjct: 250 EGAVIDRPEGYEPPVQEAV 268
Score = 89.4 bits (212), Expect = 5e-18
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = -2
Query: 508 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 353
GMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKT
Sbjct: 105 GMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKT 156
Score = 80.6 bits (190), Expect = 3e-15
Identities = 45/80 (56%), Positives = 47/80 (58%)
Frame = -3
Query: 750 PFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLADLQADIDAERS 571
PF RK + P Q + G LKGRVFEVSLADLQ DID ERS
Sbjct: 24 PFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERS 83
Query: 570 FRKFRLIAEYVQGRNVLCNF 511
FRKFRLIAE VQ RNVLCNF
Sbjct: 84 FRKFRLIAEDVQDRNVLCNF 103
Score = 39.5 bits (88), Expect = 0.006
Identities = 16/32 (50%), Positives = 26/32 (81%)
Frame = -1
Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVVN 255
YAQ +QVR IR +M +IIT +V+ ++L+++VN
Sbjct: 158 YAQQSQVRKIRARMTDIITNEVSGADLKQLVN 189
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 92.3 bits (219), Expect = 8e-19
Identities = 48/79 (60%), Positives = 55/79 (69%), Gaps = 5/79 (6%)
Frame = -3
Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKS 76
+L DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH S
Sbjct: 85 KLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSS 144
Query: 75 E-----RPEGYEPPVQESV 34
E RPEGYEPPVQE+V
Sbjct: 145 EGAVIDRPEGYEPPVQEAV 163
Score = 87.0 bits (206), Expect = 3e-17
Identities = 40/51 (78%), Positives = 43/51 (84%)
Frame = -2
Query: 505 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 353
MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKT
Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKT 51
Score = 39.5 bits (88), Expect = 0.006
Identities = 16/32 (50%), Positives = 26/32 (81%)
Frame = -1
Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVVN 255
YAQ +QVR IR +M +IIT +V+ ++L+++VN
Sbjct: 53 YAQQSQVRKIRARMTDIITNEVSGADLKQLVN 84
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 92.3 bits (219), Expect = 8e-19
Identities = 48/79 (60%), Positives = 55/79 (69%), Gaps = 5/79 (6%)
Frame = -3
Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKS 76
+L DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH S
Sbjct: 140 KLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSS 199
Query: 75 E-----RPEGYEPPVQESV 34
E RPEGYEPPVQE+V
Sbjct: 200 EGAVIDRPEGYEPPVQEAV 218
Score = 89.4 bits (212), Expect = 5e-18
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = -2
Query: 508 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 353
GMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKT
Sbjct: 55 GMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKT 106
Score = 77.0 bits (181), Expect = 3e-14
Identities = 39/47 (82%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Frame = -3
Query: 648 CFXGLK-GRVFEVSLADLQADIDAERSFRKFRLIAEYVQGRNVLCNF 511
CF +K GRVFEVSLADLQ DID ERSFRKFRLIAE VQ RNVLCNF
Sbjct: 7 CFKPVKSGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNF 53
Score = 39.5 bits (88), Expect = 0.006
Identities = 16/32 (50%), Positives = 26/32 (81%)
Frame = -1
Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVVN 255
YAQ +QVR IR +M +IIT +V+ ++L+++VN
Sbjct: 108 YAQQSQVRKIRARMTDIITNEVSGADLKQLVN 139
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 92.3 bits (219), Expect = 8e-19
Identities = 48/79 (60%), Positives = 55/79 (69%), Gaps = 5/79 (6%)
Frame = -3
Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKS 76
+L DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH S
Sbjct: 190 KLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSS 249
Query: 75 E-----RPEGYEPPVQESV 34
E RPEGYEPPVQE+V
Sbjct: 250 EGAVIDRPEGYEPPVQEAV 268
Score = 89.4 bits (212), Expect = 5e-18
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = -2
Query: 508 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 353
GMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKT
Sbjct: 105 GMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKT 156
Score = 80.6 bits (190), Expect = 3e-15
Identities = 45/80 (56%), Positives = 47/80 (58%)
Frame = -3
Query: 750 PFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLADLQADIDAERS 571
PF RK + P Q + G LKGRVFEVSLADLQ DID ERS
Sbjct: 24 PFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERS 83
Query: 570 FRKFRLIAEYVQGRNVLCNF 511
FRKFRLIAE VQ RNVLCNF
Sbjct: 84 FRKFRLIAEDVQDRNVLCNF 103
Score = 39.5 bits (88), Expect = 0.006
Identities = 16/32 (50%), Positives = 26/32 (81%)
Frame = -1
Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVVN 255
YAQ +QVR IR +M +IIT +V+ ++L+++VN
Sbjct: 158 YAQQSQVRKIRARMTDIITNEVSGADLKQLVN 189
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 89.4 bits (212), Expect = 5e-18
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = -2
Query: 508 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 353
GMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKT
Sbjct: 105 GMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKT 156
Score = 80.6 bits (190), Expect = 3e-15
Identities = 45/80 (56%), Positives = 47/80 (58%)
Frame = -3
Query: 750 PFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLADLQADIDAERS 571
PF RK + P Q + G LKGRVFEVSLADLQ DID ERS
Sbjct: 24 PFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERS 83
Query: 570 FRKFRLIAEYVQGRNVLCNF 511
FRKFRLIAE VQ RNVLCNF
Sbjct: 84 FRKFRLIAEDVQDRNVLCNF 103
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = -1
Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNS*FLTPLPRTSRRPAMASTLCAMF 183
YAQ +QVR IR +M +IIT +V+ ++L++++ S T L + S++ A MF
Sbjct: 158 YAQQSQVRKIRARMTDIITNEVSGADLKQLLTSWPWTRLRKISKKAVSAYIHYMMF 213
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,318,463
Number of Sequences: 53049
Number of extensions: 775909
Number of successful extensions: 2144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2135
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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