Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30432.Seq
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    82   4e-16
AF100663-3|AAC68980.1|  529|Caenorhabditis elegans Udp-glucurono...    30   1.8  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeo...    28   7.4  
U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeo...    28   7.4  
U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.       28   7.4  
Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    28   9.8  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 38/74 (51%), Positives = 53/74 (71%)
 Frame = -3

Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKS 76
           +LIPDSI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L +LH          G+K 
Sbjct: 185 KLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLH-GDSITVGADGEKV 243

Query: 75  ERPEGYEPPVQESV 34
           +RP+ YEPPVQ+ V
Sbjct: 244 DRPDDYEPPVQQEV 257



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 36/65 (55%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
 Frame = -2

Query: 505 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTXTPST--LR 332
           M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I FT K     +KT    T  +R
Sbjct: 101 MSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIR 160

Query: 331 SEQSE 317
             +SE
Sbjct: 161 KIRSE 165



 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 37/82 (45%), Positives = 44/82 (53%)
 Frame = -3

Query: 750 PFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLADLQADIDAERS 571
           PF RK     + P               + G +    GLKGRVFEVSL DL    ++E  
Sbjct: 22  PFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLN---NSEAD 78

Query: 570 FRKFRLIAEYVQGRNVLCNFQA 505
           FRKF+LIAE VQG+NVL NF A
Sbjct: 79  FRKFKLIAEDVQGKNVLTNFHA 100



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -1

Query: 737 KDXSDVKAPSMFSKRQVGTTLVXRPQGXKXAS 642
           K+  D+KAP+MF+ RQVG TL+ R QG K AS
Sbjct: 26  KEWYDIKAPNMFNTRQVGKTLINRTQGTKIAS 57


>AF100663-3|AAC68980.1|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein20 protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 205 AMAGLLDVLGNGVRNQLFTTSLSSELVTSRVMISHIFFLIALT*VCWAXTSCVGSRS 375
           A  G L  L N  R Q F      +++   ++I+ IF  ++   V +A   C+GSR+
Sbjct: 465 ARFGKLPSLDNYGRQQSFVEYFFLDIIAIFILITLIFLYVSFRIVKFAFRKCIGSRN 521


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
            R09E10.7 protein.
          Length = 1717

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
 Frame = -1

Query: 377  GLLEPT-QDVYAQHTQVRAIRKKMCEIITRDV-TNSELREVVNS*FL------TPLPRTS 222
            G+L+   Q V    TQ+R IR++  EII  D   N EL  +  + FL      T  P TS
Sbjct: 850  GILDQIWQTVPMSDTQIRKIRERASEIIESDSGNNGELPPIAMTKFLFLALYWTEPPSTS 909

Query: 221  RRPAMASTL 195
             RP  A ++
Sbjct: 910  IRPVPAQSV 918


>U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform a protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 785 NSHTIHFPDCRPHSFAKDXSDVKAPSMFSKRQ 690
           N HTIH  D    S +   S V A S+ S+ Q
Sbjct: 386 NHHTIHHVDIHETSISNSISSVTASSLLSREQ 417


>U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform b protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 785 NSHTIHFPDCRPHSFAKDXSDVKAPSMFSKRQ 690
           N HTIH  D    S +   S V A S+ S+ Q
Sbjct: 384 NHHTIHHVDIHETSISNSISSVTASSLLSREQ 415


>U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 785 NSHTIHFPDCRPHSFAKDXSDVKAPSMFSKRQ 690
           N HTIH  D    S +   S V A S+ S+ Q
Sbjct: 386 NHHTIHHVDIHETSISNSISSVTASSLLSREQ 417


>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
           protein T23G4.1 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 123 VPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTVHHLPE 272
           +P  S  +NGASS+ SP G K       H +  +   Q  Q+S+    P+
Sbjct: 37  LPEGSSKKNGASSSSSPQGKKDEKNHILHHQHHQQQQQSKQKSSPRSTPQ 86


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 654 EXCFXGLKGRVFEVSLADLQADIDAERSFRKFRLIAEYVQGRN 526
           + C   L+G  + +S+ D +A  D E S +  R IAE+++ R+
Sbjct: 195 QYCGGSLRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
           protein TLP-1 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 123 VPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTVHHLPE 272
           +P  S  +NGASS+ SP G K       H +  +   Q  Q+S+    P+
Sbjct: 37  LPEGSSKKNGASSSSSPQGKKDEKNHILHHQHHQQQQQSKQKSSPRSTPQ 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,925,864
Number of Sequences: 27780
Number of extensions: 391065
Number of successful extensions: 1057
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)