Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30432.Seq
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   2.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   2.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   2.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.3  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 545 NMCKDVMCSATSRHGPHN 492
           +MC DVM +  S+HG  N
Sbjct: 63  DMCPDVMSAGESKHGLTN 80


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 545 NMCKDVMCSATSRHGPHN 492
           +MC DVM +  S+HG  N
Sbjct: 68  DMCPDVMSAGESKHGLTN 85


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 545 NMCKDVMCSATSRHGPHN 492
           +MC DVM +  S+HG  N
Sbjct: 68  DMCPDVMSAGESKHGLTN 85


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 238 GVRNQLFTTSLSSELVTSRVM 300
           G+ N L  T+LSS LV SRV+
Sbjct: 608 GLGNSLAITALSSILVLSRVI 628


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 557 LNLRKDLSASMSACRSARE 613
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 129 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 221
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 231 WQWSQESTVHHLPEF 275
           WQW++E   ++L +F
Sbjct: 173 WQWNEERKQYYLHQF 187


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 129 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 221
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,018
Number of Sequences: 438
Number of extensions: 4462
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)