Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30432.Seq
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)            84   1e-16
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...    82   5e-16
At3g17380.1 68416.m02221 meprin and TRAF homology domain-contain...    30   2.3  
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    28   6.9  

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 39/69 (56%), Positives = 49/69 (71%)
 Frame = -2

Query: 517 QLPGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTXTPST 338
           Q  GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI FT + +   ++T    +
Sbjct: 99  QFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQS 158

Query: 337 LRSEQSERK 311
            +  Q  RK
Sbjct: 159 SQIRQIRRK 167



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 27/46 (58%), Positives = 39/46 (84%)
 Frame = -3

Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 118
           + IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLME+H
Sbjct: 187 KFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVH 232



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 31/50 (62%), Positives = 34/50 (68%)
 Frame = -3

Query: 660 GXEXCFXGLKGRVFEVSLADLQADIDAERSFRKFRLIAEYVQGRNVLCNF 511
           G +    GLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVL  F
Sbjct: 53  GTKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQF 100



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 20/32 (62%), Positives = 21/32 (65%)
 Frame = -1

Query: 737 KDXSDVKAPSMFSKRQVGTTLVXRPQGXKXAS 642
           KD  DVKAP  F+ R VG TLV R QG K AS
Sbjct: 27  KDWYDVKAPGSFTNRNVGKTLVSRTQGTKIAS 58



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 14/31 (45%), Positives = 25/31 (80%)
 Frame = -1

Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVV 258
           YAQ +Q+R IR+KM EI+ ++ ++ +L+E+V
Sbjct: 155 YAQSSQIRQIRRKMSEIMVKEASSCDLKELV 185


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = -2

Query: 517 QLPGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTXTPST 338
           Q  GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++T    +
Sbjct: 99  QFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQS 158

Query: 337 LRSEQSERK 311
            +  Q  RK
Sbjct: 159 SQIRQIRRK 167



 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 26/46 (56%), Positives = 39/46 (84%)
 Frame = -3

Query: 255 QLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 118
           + IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLM++H
Sbjct: 187 KFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVH 232



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 36/80 (45%), Positives = 42/80 (52%)
 Frame = -3

Query: 750 PFIRKGXVRCQGPVYVQQEASRHHACXPSPGXEXCFXGLKGRVFEVSLADLQADIDAERS 571
           PF +K     + P               + G +    GLK RVFEVSLADLQ D D   +
Sbjct: 23  PFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED--NA 80

Query: 570 FRKFRLIAEYVQGRNVLCNF 511
           +RK RL AE VQGRNVLC F
Sbjct: 81  YRKIRLRAEDVQGRNVLCQF 100



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/32 (65%), Positives = 23/32 (71%)
 Frame = -1

Query: 737 KDXSDVKAPSMFSKRQVGTTLVXRPQGXKXAS 642
           KD  DVKAPS+F+ R VG TLV R QG K AS
Sbjct: 27  KDWYDVKAPSIFTHRNVGKTLVSRTQGTKIAS 58



 Score = 34.7 bits (76), Expect = 0.080
 Identities = 13/31 (41%), Positives = 25/31 (80%)
 Frame = -1

Query: 350 YAQHTQVRAIRKKMCEIITRDVTNSELREVV 258
           YAQ +Q+R IR+KM +I+ R+ ++ +L+++V
Sbjct: 155 YAQSSQIRQIRRKMRDIMVREASSCDLKDLV 185


>At3g17380.1 68416.m02221 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 309

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 615 VSLADLQADIDAERSFRKFRL-IAEYVQGRNVLCNFQAWTSQPISSGGWLK 466
           ++L D +   D  + F +F + I + +QGR++      W S+  S  GW+K
Sbjct: 224 LTLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVK 274


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1544

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 312  FLSDCSDLSVL--GVXVLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLS 485
            FLS CSDLSVL   +  +  LKE LL     K      + +    + S+R C    + L 
Sbjct: 907  FLSGCSDLSVLPENIGAMTSLKELLLDGTAIKNLPESINRLQNLEILSLRGCKIQELPLC 966

Query: 486  LSVVRSM 506
            +  ++S+
Sbjct: 967  IGTLKSL 973


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,059,076
Number of Sequences: 28952
Number of extensions: 370081
Number of successful extensions: 998
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)