Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30431.Seq
         (917 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   7.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   7.7  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 630 TLAITMFSQMAFATGTFLSFIV 565
           TLA T +S + F T  FL FI+
Sbjct: 227 TLANTFWSALYFLTIIFLFFII 248


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 318 NKSKTSYVVTEKSLPNADVYESDSSHSENVKEKPAK 425
           N  KT Y +  KSLP     +S   H+++  ++  K
Sbjct: 186 NTGKTQYNLNSKSLPR-QYSQSRGRHNQSRSKRQPK 220


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 689 FLYVSTKVPPISE*GPRFWIXER*SQVCRK 778
           + Y S  + PIS  G  FW   R  ++ RK
Sbjct: 555 YCYYSISIRPISTLGWFFWSLLRIYELARK 584


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,517
Number of Sequences: 336
Number of extensions: 3529
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)