Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30431.Seq
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    28   1.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   4.9  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   6.5  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    26   8.6  

>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 626 NVTGFSVSDDYGDVHIPNKXIFLYVSTKVPPISE 727
           ++T   +  D+ D+ I +K IFLY     PP+++
Sbjct: 95  SMTANEIGKDFEDLGIVSKMIFLYAVPAFPPLTD 128


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 642 LKPVTLAITMFSQMAFATGTFLSFIVKSMTSIWTTVSLISSVRLIQSHQCFQF 484
           LK   + +++    A A  +F+S   KS+  ++  V L     LI SH+CFQ+
Sbjct: 846 LKQADVGVSLSDSEACAAASFVSK-KKSIKDVFN-VLLEGRCSLILSHRCFQY 896


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 738 LGPHSEIGGTLVETYRNMXL-LGICTSP*SSETLKPV 631
           LGPHSE  G  +E+Y+   + +G   S   SE +K +
Sbjct: 390 LGPHSEAEGQGMESYQKAIMEIGNLISSKGSEAVKQI 426


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 647 SDDYGDVHIPNKXIFLYVSTK 709
           SDD GD+++P K +  ++ TK
Sbjct: 192 SDDSGDIYLPVKKVGKFIPTK 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,383
Number of Sequences: 5004
Number of extensions: 57844
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)