Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30431.Seq
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0302 + 22935037-22935060,22936255-22936352,22936541-22936862     30   2.2  
01_01_0561 + 4122751-4123140,4124226-4124484,4124639-4124985           30   2.2  
02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628...    30   3.0  

>03_05_0302 + 22935037-22935060,22936255-22936352,22936541-22936862
          Length = 147

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = -3

Query: 705 VETYRNMXLLGICTSP*SSETLKPVT------LAITMFSQMAFATGTFLSFIVKSMTSIW 544
           ++ +R M LLG CT   +S TL P +      L  T F      TG  +SF++ ++   W
Sbjct: 44  MQAHREMKLLGCCT---NSGTLSPSSKNLHGFLYSTGFEAKILQTG-MVSFLLSNLNDGW 99

Query: 543 TTVSLISSV 517
           T +S I ++
Sbjct: 100 TGMSFIDTL 108


>01_01_0561 + 4122751-4123140,4124226-4124484,4124639-4124985
          Length = 331

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/94 (23%), Positives = 38/94 (40%)
 Frame = +3

Query: 255 NAVIQKADVYDSDSNHSLIESNKSKTSYVVTEKSLPNADVYESDSSHSENVKEKPAKINX 434
           +AV+ +  +    SN +  E+N  K     T      A      S   +N K K AK + 
Sbjct: 195 DAVLAELGISGGSSNAAQDENNAEKKGSNQTGDGDAPAPSESKSSKKKKNKKAKEAKESQ 254

Query: 435 XXXXXXXXXXXEKPLEETENIDVTESIARRKSVR 536
                       +P E+T ++DV E + +  S++
Sbjct: 255 EPADGTEETASAEPDEDTTSVDVKERLKKMASMK 288


>02_04_0211 +
           20957553-20957828,20957944-20958258,20962094-20962801,
           20963362-20963609,20963758-20964101,20964200-20964236,
           20964270-20964575,20965281-20965347,20965498-20965626
          Length = 809

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 897 VTXHIXLGFPRGWKFSPPPSFHGRXFP 817
           +  H  + FP G  F PPPS  G  FP
Sbjct: 377 IRFHYAMKFPNGGGFFPPPSCSGGWFP 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,003,584
Number of Sequences: 37544
Number of extensions: 370655
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)