Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30431.Seq
         (917 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    30   1.9  
At5g56240.1 68418.m07018 expressed protein                             28   10.0 
At3g63250.2 68416.m07106 homocysteine S-methyltransferase 2 (HMT...    28   10.0 

>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
           to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) {Homo sapiens}; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF01119: DNA mismatch
           repair protein, C-terminal domain
          Length = 1151

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 509 INRTEEISETVVQIDVIDLTINDKNVPVANAICE-NIV--MANVTGFSVSDDY 658
           I   EE+ +T        L + D      N++C+ N+   M NV+GF  +DD+
Sbjct: 195 IESDEELFQTNPSSSAFSLLMRDAGTEAVNSLCKVNVTDGMLNVSGFECADDW 247


>At5g56240.1 68418.m07018 expressed protein 
          Length = 986

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 276 DVYDSDSNHSLIESNKSKTSYVVTEKSLPNADVYESDSSHSENVKEKPAK 425
           D  D D   S  E + +K ++V+ +     A+ Y+S+S    +++  P++
Sbjct: 607 DYNDDDEESSEEEGDNNKRAHVLDQTDYTGAEFYQSESDSPTSIEILPSE 656


>At3g63250.2 68416.m07106 homocysteine S-methyltransferase 2 (HMT-2)
           99.7% identical to homocysteine S-methyltransferase
           AtHMT-2 (GI:6685163) [Arabidopsis thaliana]
          Length = 293

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 583 IFIIYSQINDIYLDYGLTDFLRAIDSVTSMFSVSSKGFSREVLLSELSKSVFI 425
           ++ +  Q++  YL+ G  D + +     ++    +KGFSRE   S L KSV I
Sbjct: 10  LYFLMEQVHLDYLEAG-ADIISSASYQATIQGFEAKGFSREESESLLKKSVEI 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,011,408
Number of Sequences: 28952
Number of extensions: 303232
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)