Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30430.Seq
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 140 3e-34
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 36 0.007
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 31 0.27
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 27 3.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 5.8
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 5.8
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 26 7.7
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 26 7.7
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 26 7.7
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 140 bits (338), Expect = 3e-34
Identities = 86/192 (44%), Positives = 117/192 (60%), Gaps = 5/192 (2%)
Frame = +3
Query: 246 QG*LEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKL 425
Q + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNLE D VG V+FGND+L
Sbjct: 50 QAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRL 109
Query: 426 IKEGDIVKRTGAIVDVPVGEQILGRVVELWVTLLMARDQSTRNPV*GSVLRR-QVSFPGC 602
++EG++VKRT IVDVPVGE +LGRVV+ + + P+ + RR Q+ PG
Sbjct: 110 VREGEVVKRTRHIVDVPVGEALLGRVVD-----ALGNPIDGKGPIKTTERRRVQLKAPGI 164
Query: 603 L-CVNLCRMVS---RLLTLWYQLGRGQA*IDSLVTVKLGKXCPGH**RFINHSXXSTRXR 770
L ++C + + + +GRGQ + + + GK +NH +
Sbjct: 165 LPRTSVCEPMQTGLKAIDSMVPIGRGQREL-IIGDRQTGKTAIAL-DTILNHKRWN-NSS 221
Query: 771 XXKKKFYCIYVA 806
KK YC+YVA
Sbjct: 222 DESKKLYCVYVA 233
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 512 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQNGIKAVDSLVPIGPWSSVN*FIG 691
+G P+D +GPI + AP + + E ++ GIK VD L P + F G
Sbjct: 145 IGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGG 204
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 399 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVEL 512
+ + G + L++ G V TG+ + +PVG LGR++ +
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNV 144
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -3
Query: 661 PNWYQRVNSLDTILHRFTHRHPGNDTWRLNTDPHTGFRVDWSLAINRVTQSSTTRPRICS 482
PN QR++SLD+ F HPGN T + R+ ++ + + + S
Sbjct: 168 PNKVQRLSSLDSSQDSFQEEHPGNVTGTTFSSQAPEERIASPISTSSPESLTNQSSSLQS 227
Query: 481 PTGTSTIAP 455
TS++AP
Sbjct: 228 SLQTSSMAP 236
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 541 WSLAINRVTQSSTTRPRICS 482
WS A+N+V Q ++TR R+ S
Sbjct: 437 WSSAVNKVHQENSTRERVVS 456
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 450 RTGAIVDVPVGEQILGRVVELWV 518
R GA VD V ++ LGR+ LW+
Sbjct: 785 RRGATVDKTVAKKNLGRLTRLWL 807
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 563 SYGISCRLVPCHQ*GYPKLYYTPKDLLSDG 474
S+G + ++P YPK YY P+ LSDG
Sbjct: 384 SFGCNHTVLP-EAAAYPKPYYPPQITLSDG 412
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -3
Query: 550 RVDWSLAINR-VTQSSTTRPRICSPTGTSTIA 458
R DW++A+++ T++ +TR CS T STIA
Sbjct: 35 RPDWTIALSQHETETRSTRTS-CSTTTESTIA 65
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 7.7
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 514 QSSTTRPRICSPTGTSTIAP 455
++ TRPR+ +P+ +ST+ P
Sbjct: 51 RNRNTRPRVSAPSSSSTVVP 70
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 681 DSLVTVKLGKXCPGH**RFINHSXXSTRXRXXKKKFYCIYVANWTXRXPTVAPKL 845
DSL K GK +FI T + + + A+WT P+V PKL
Sbjct: 54 DSLYIAKYGKLKKTK--KFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKL 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,798
Number of Sequences: 5004
Number of extensions: 71634
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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