Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30430.Seq
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0899 - 8689125-8689383,8689540-8689826 31 0.87
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 31 1.2
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 31 1.5
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 30 2.7
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022... 29 3.5
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759 29 4.7
02_04_0275 - 21469391-21470650 29 4.7
02_01_0688 + 5131555-5132334 29 4.7
12_02_0396 + 18577574-18578056,18578094-18578723 29 6.2
07_01_0711 + 5374717-5374992,5375022-5375277,5375317-5375384,537... 29 6.2
06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105... 29 6.2
03_05_0112 + 20955777-20956359,20956533-20957707 29 6.2
03_02_0293 - 7166470-7167618 29 6.2
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 8.1
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 28 8.1
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 31.5 bits (68), Expect = 0.87
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 122 PRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEPRPRL 253
P C R P+ PW +A +PP PP+ G+ RP L
Sbjct: 38 PPCARLLLPEPPWGMAALPPEPPWGAAAHPPAPHWGAGPSRPAL 81
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 119 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKR 226
+PR + WR P LA + QP K P S P SK+
Sbjct: 412 MPRNRYWRTPVKSPVLAKKLEQPAQKRPSSAPKSKK 447
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 119 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRG 229
+P+ + WR P + + QP K P SPP SK+G
Sbjct: 635 MPKNRYWRTPVKSPVPSMKLEQPAQKKPSSPPKSKKG 671
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 119 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEP 241
+PR + WR P P A + Q K P SPP K+ + P
Sbjct: 552 MPRNRYWRLPVKPPIPAKKLEQLAQKKPPSPPKPKKPKVGP 592
>05_03_0313 +
12200743-12200955,12201238-12201622,12201997-12202274,
12202359-12202976
Length = 497
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 119 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKR 226
+P+ + W+ P P LA + QP K P S P K+
Sbjct: 440 MPKNRYWKMPVEPPILAKKLEQPAQKKPPSAPKPKK 475
>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
Length = 417
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 348 RTPPSPQPGCSSSH-KHER-YHHQCSRHDQSLLVSLGRGSKDPLFEDGGDLG 199
RTPP P+P H +H R Y S + + +V + G+ +P GG+ G
Sbjct: 200 RTPPRPRPPSPPQHPRHRRSYEMDRSCEENAKIVEVDSGAGEPA-RRGGEYG 250
>02_04_0275 - 21469391-21470650
Length = 419
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -1
Query: 357 GLRRTPPSPQPGCSSSHKHERYHHQCSRH 271
G RRT + G SS+H H RY Q SRH
Sbjct: 345 GTRRTAMATDVGTSSNH-HVRYRFQDSRH 372
>02_01_0688 + 5131555-5132334
Length = 259
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 158 WHLANYMSQPPTKLPRSPPSSKRGSLEPRPRLTRRDWSCLE 280
+HLA PP P PP + G+ PR DW C E
Sbjct: 153 FHLACVRVWPPLMPPPPPPPAPPGARRPR-ATANEDWICPE 192
>12_02_0396 + 18577574-18578056,18578094-18578723
Length = 370
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 119 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKR 226
+PR + WR P P A + QP + P S P K+
Sbjct: 313 MPRNRYWRTPVKPSTPAKKLEQPAQRKPPSAPKPKK 348
>07_01_0711 +
5374717-5374992,5375022-5375277,5375317-5375384,
5375556-5376287,5377013-5377270
Length = 529
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 119 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGS 232
+PR + W+ P A + QP + P S P K+GS
Sbjct: 409 MPRNRYWKTPVKSSTPAKKLEQPAQRKPSSAPKPKKGS 446
>06_01_0138 -
1051408-1051625,1052790-1052889,1053724-1054085,
1055055-1055079
Length = 234
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 216 PRREDPWSRAQG*LEETGRVLSIGDGIARVYGLKNIQAEEMVEFS 350
P + PW R Q + +GDG+ ++ G+ + ++VE S
Sbjct: 69 PSKRPPWQRPQPPSQRDAPATDVGDGLTKLRGVDDGGYMDVVELS 113
>03_05_0112 + 20955777-20956359,20956533-20957707
Length = 585
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = -3
Query: 667 PRPNWYQRVNSLDTILHRFTHRHPGNDTWRLNTDPHTGFRVDWSLAINRVTQSSTTRPRI 488
PR ++YQ N+ +T L + + P N+T R+ P++ ++ AI ST P
Sbjct: 184 PR-SYYQGGNNNETQLAQLAYLVPANETGRIPGQPYSS--IENVKAITTRGGKSTRDPPY 240
Query: 487 CSPTGTS 467
+P GT+
Sbjct: 241 PNPAGTN 247
>03_02_0293 - 7166470-7167618
Length = 382
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 521 PIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQNGIKAVDSLVPIGPWSSVN 679
P G+G D K R VG+ +PG + V + + A S P W VN
Sbjct: 240 PFHGQGHYDAKLRAWVGLHSPGHVCTCDVPSTTFSSVAAATSQPP--AWQLVN 290
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 116 LLPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGS 232
++PR + W+ P P A + Q K P S P ++GS
Sbjct: 635 MMPRNRYWKTPVKPPIPAKKLEQSAQKKPPSAPKPRKGS 673
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 402 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSSSHKHERY--HHQCS 277
PH Q P P P PP +P S+SH H R+ HH S
Sbjct: 110 PHHQQQGPGASPSP---PPPPPRGRPSFSASHSHHRHGGHHHRS 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,161,896
Number of Sequences: 37544
Number of extensions: 568752
Number of successful extensions: 1873
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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