Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30430.Seq
         (846 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   5e-20
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                45   7e-05
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   6.3  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   6.3  
SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)                29   6.3  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 44/48 (91%), Positives = 48/48 (100%)
 Frame = +3

Query: 366 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVE 509
           MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVV+
Sbjct: 1   MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVD 48



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 46/65 (70%), Positives = 49/65 (75%)
 Frame = +2

Query: 509 ALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQNGIKAVDSLVPIGPWSSVN*FI 688
           ALGNPIDGKGP    +R RVG+KAPGIIPR SV+EPM  GIKAVDSLVPIG        I
Sbjct: 49  ALGNPIDGKGPTGG-TRARVGVKAPGIIPRTSVKEPMLTGIKAVDSLVPIGR-GQRELII 106

Query: 689 GDRQT 703
           GDRQT
Sbjct: 107 GDRQT 111


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +2

Query: 512 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQNGIKAVDSLVPIGPWSSVN*FIG 691
           +G PID +GP++T  R  +  +AP  +   + +E ++ GIK VD L P      +  F G
Sbjct: 161 IGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGG 220


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 491  DLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVRF 381
            D LSDG+    ++T  N  F+D+++   + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 336 SPQPGCSSSHKHERYHHQCSRHDQSLLVSL 247
           SP P  SS H H R H+ C  H   ++V++
Sbjct: 61  SPLPLSSSHHHHHRRHYLCHHHIIIIIVAI 90


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 622  LHRFTHRHPGNDTWRLNTDPHTGFRVDWSLA-----INRVTQSSTTRPRICSPTGTST 464
            L RF HRHPGN     N +     RV+ ++      I   + S T+    CSP+ T T
Sbjct: 2193 LPRFHHRHPGNLNRERNLEV-VSSRVEQNICSTSANIPLHSSSVTSSAAFCSPSNTDT 2249


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 422  LVITKYYHTHIVRFQVKGHSLEA*GELHHLLSLDVLQAINTSDTITNAQDTTSLF 258
            L +T  Y T +V F  K H+     +L  L+  D L +    + ITN   T  +F
Sbjct: 2403 LSVTNQYGTELVPFHEKDHTHPLGHQLSLLMKEDYLMSYVGGEQITNISYTGKIF 2457


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 575 KAPGIIPRVSVREPMQNGI--KAVDSLVPIGPWSSVN*FIGDRQTW*XLPWPLITIHQP 745
           ++PG++ R S   P  + +   +V SL    PWSS+     D+ T   +P+    +H+P
Sbjct: 17  ESPGVV-RYSSHSPPFHSVFYTSVRSLYYADPWSSMEEVFSDKDTKPEVPFLQAALHKP 74


>SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)
          Length = 515

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 586 TWRLNTDPHTGFRVDWSLAINRVTQSSTTRPRI 488
           TWR +  P   FR +W+L +   T     +P++
Sbjct: 377 TWRQHRKPKLPFRANWALKVTSYTWRQHRKPKL 409


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 122 PRCQRWRCPQWPWHLANYMSQPPTKLPR---SPPSSKRGSLEPRPRLTRRD 265
           PR +R R P+   H     + PP +  +   SPP  +R S  P PR  RRD
Sbjct: 854 PRDRRRRSPE---HRRRREASPPRRDRKRYDSPPRRRRRSPSPPPRRRRRD 901



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 179  SQPPTKL-PRSPPSSKRGSLEPRPRLTRR 262
            S PP +  P  PP  KR S  P PR  RR
Sbjct: 941  SPPPMRSSPLPPPQRKRASTPPSPRRARR 969


>SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 327 PGCSSSHKHERYHHQCSRHDQSLLVSLGRGSKDPL 223
           P  SSS    RYHH  S+  +S+++   +  ++PL
Sbjct: 65  PSSSSSFIKIRYHHHLSKSSKSVIIITYQNHQNPL 99


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -1

Query: 327 PGCSSSHKHERYHHQCSRHDQSLLVSLGRGSKDPLFE 217
           P C   H H  +HH    H  SL V L      P F+
Sbjct: 115 PLCHHHHHHLHHHHHLCHHHLSLFVCLPTQHYFPAFQ 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,738,172
Number of Sequences: 59808
Number of extensions: 597194
Number of successful extensions: 1867
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1853
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)