Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30430.Seq
(846 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 128 6e-30
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 38 0.008
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 38 0.008
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 38 0.008
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 31 0.96
At3g58990.1 68416.m06575 aconitase C-terminal domain-containing ... 30 2.2
At3g45410.1 68416.m04902 lectin protein kinase family protein co... 29 2.9
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 2.9
At1g16270.1 68414.m01948 protein kinase family protein contains ... 29 2.9
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 29 5.1
At2g32235.1 68415.m03939 expressed protein 28 6.8
At2g41290.1 68415.m05099 strictosidine synthase family protein s... 28 9.0
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 28 9.0
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 9.0
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 128 bits (308), Expect = 6e-30
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +3
Query: 255 LEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKE 434
++E GRV+S+GDGIA+VYGL IQA EMV F++G+KGMALNLE +NVG+VVFG D IKE
Sbjct: 297 VDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKE 356
Query: 435 GDIVKRTGAIVDVPVGEQILGRVVE 509
GD+VKRTG+IVDVP G+ +LGRVV+
Sbjct: 357 GDLVKRTGSIVDVPAGKAMLGRVVD 381
Score = 76.2 bits (179), Expect = 3e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +2
Query: 509 ALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQNGIKAVDSLVPIGPWSSVN*FI 688
A+G PIDGKG + + RV +KAPGI+ R SV EPMQ G+KAVDSLVPIG I
Sbjct: 382 AMGVPIDGKGALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGR-GQRELLI 440
Query: 689 GDRQT 703
GDRQT
Sbjct: 441 GDRQT 445
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 512 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQNGIKAVDSLVP 655
LG PID +G I T+ + + AP ++ + +E + GIK VD L P
Sbjct: 173 LGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAP 220
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 399 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVEL 512
+ + G + L++ G V TGA + VPVG LGR++ +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNV 172
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 512 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQNGIKAVDSLVP 655
LG PID +G I T+ + + AP ++ + +E + GIK VD L P
Sbjct: 176 LGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAP 223
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 399 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVEL 512
+ + G + L++ G V TGA + VPVG LGR++ +
Sbjct: 139 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNV 175
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 512 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQNGIKAVDSLVP 655
LG PID +G I T+ + + AP ++ + +E + GIK VD L P
Sbjct: 173 LGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAP 220
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 399 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVEL 512
+ + G + L++ G V TGA + VPVG LGR++ +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNV 172
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 101 GACLMLLPRCQRWRCPQWPWHLANYMSQPPTKLPRSPP-SSKRGSLEPRPR 250
G+ ++ +PR +R W A ++ PP +P PP R + P PR
Sbjct: 495 GSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPR 545
>At3g58990.1 68416.m06575 aconitase C-terminal domain-containing
protein contains Pfam profile PF00694: Aconitase
C-terminal domain
Length = 253
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -1
Query: 669 DHGPIGTRESTALIPFCIGSRTDTRGMIP---GALIPTLIRDFVSIGPLPSIGLPK 511
D G TRE+ + F + DT +IP G LIP++ D +G GLPK
Sbjct: 63 DSGESITRETFHGLCFVLKDNIDTDQIIPAEYGTLIPSIPEDREKLGSFALNGLPK 118
>At3g45410.1 68416.m04902 lectin protein kinase family protein
contains Pfam profiles: PF00069 protein kinase domain,
PF00138 legume lectins alpha domain, PF00139 legume
lectins beta domain
Length = 664
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 667 PRPNWYQRVNSLDTILHRFTHRHPGNDTWRLNTD 566
P P+WYQR++ L I ++ H G L+ D
Sbjct: 433 PSPSWYQRISILKDIASALSYLHTGTKQVVLHRD 466
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 402 VVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVV 506
V +G D +I DI+ TG++ VP G ++ G+ V
Sbjct: 207 VKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTV 241
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 431 LDKLVITKYYHTHIVRFQVKGHSLEA 354
L + V+ YY TH+V++Q+ G L+A
Sbjct: 205 LRQKVLEIYYRTHVVKYQLPGEDLDA 230
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 339 PSPQPGCSSSHKHERYHHQCSRH 271
PSP P S H H +HH H
Sbjct: 321 PSPSPSPHSKHHHHHHHHHHHHH 343
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 101 GACLMLLPRCQRWRCPQWPWHLANYMSQPPTKLPRSPP-SSKRGSLEPRPR 250
G+ ++ PR +++ W ++ PP LP PP R P PR
Sbjct: 548 GSAIIWTPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPR 598
>At2g32235.1 68415.m03939 expressed protein
Length = 310
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +2
Query: 206 SPPSSKRGSLEPRPRLTRRDWSCL 277
SPPS SL PRPR+ RR S L
Sbjct: 162 SPPSGNVPSLPPRPRMFRRSVSDL 185
>At2g41290.1 68415.m05099 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]; contains strictosidine synthase
domain PF03088
Length = 376
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 336 SPQPGCSSSHKHERYHHQCSR 274
S + GC H+H+R H C R
Sbjct: 91 SAREGCEGPHEHQRTEHVCGR 111
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 494 KDLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVR 384
KDL S + L+ I F D+L++ + H H+++
Sbjct: 363 KDLYSCSKGNTKSQHLETIEFEDRLLVNSFSHIHVMK 399
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -1
Query: 402 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSS---SHKHERYHH 286
P P P P P L PP+P P + HKH+R+HH
Sbjct: 148 PAPVSPPPVQAPSPISL---PPAPAPAPTKHKRKHKHKRHHH 186
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,679,694
Number of Sequences: 28952
Number of extensions: 418273
Number of successful extensions: 1252
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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