Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30429.Seq
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 108 4e-24
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 108 5e-24
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 31 0.90
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 30 1.6
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 29 3.6
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563... 29 4.8
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 28 6.4
07_01_0556 - 4136000-4136608 28 8.4
06_03_1221 - 28514952-28518152 28 8.4
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 108 bits (260), Expect = 4e-24
Identities = 53/76 (69%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-XHSVRSRGGNTKYRALR 207
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 208 LDTGNFSWGSECSTRK 255
LDTGN+SWGSE TRK
Sbjct: 61 LDTGNYSWGSEAVTRK 76
Score = 87.4 bits (207), Expect = 1e-17
Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 2/64 (3%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT--EA 425
+TRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A +A
Sbjct: 76 KTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDA 135
Query: 426 EEAI 437
E A+
Sbjct: 136 EHAL 139
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/47 (74%), Positives = 44/47 (93%)
Frame = +2
Query: 512 LEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 652
+EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 188 IEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 108 bits (259), Expect = 5e-24
Identities = 53/76 (69%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-XHSVRSRGGNTKYRALR 207
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 208 LDTGNFSWGSECSTRK 255
LDTGN+SWGSE TRK
Sbjct: 61 LDTGNYSWGSEAVTRK 76
Score = 89.4 bits (212), Expect = 2e-18
Identities = 48/88 (54%), Positives = 59/88 (67%), Gaps = 8/88 (9%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------G 407
+TRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK
Sbjct: 76 KTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDA 135
Query: 408 AKLTEAEEAIINKKRSQKTARKYLARQR 491
A+ E E A K+S RK RQ+
Sbjct: 136 AEGQEGEAATEEAKKSNHVVRKLEKRQQ 163
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/47 (74%), Positives = 44/47 (93%)
Frame = +2
Query: 512 LEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 652
+EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 171 IEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 103 RKYELGRPAANTRLGPQRXHSVRSR----GGNTKYRALRLDTGN-FSWGS 237
R+ +LG P+ +T+ P+R S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRXHSVRSRGGNTK 192
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRXHSVRSRGGNTKYRALR 207
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRK--RRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRXHSVRSRGGNTK 192
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>10_08_0663 -
19666476-19667017,19667664-19667755,19668039-19668095,
19668304-19668447,19668567-19668613,19668733-19668791,
19668975-19669045,19669274-19669341,19669431-19669598,
19669885-19669944,19670075-19670251
Length = 494
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 308 CTHQFIVRCIIHNINDTGLRVEHSDPQEKLP 216
C H+F ++C ++ + + RVE + P +P
Sbjct: 316 CCHEFCIKCALYLCSTSNTRVEFTGPPGSIP 346
>01_06_1154 -
34955235-34955827,34955912-34956045,34956142-34956389,
34956431-34956901
Length = 481
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 281 IIHNINDTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTE 162
++ + D G RV H + QEKL RR ++ P R+ TE
Sbjct: 288 VVDGVGDRGARVNHGEIQEKL---RRELDTVLGPGRQITE 324
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 524 FHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 652
F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 104 FYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>07_01_0556 - 4136000-4136608
Length = 202
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 115 LGRPAANTRLGPQRXHSVRSRGGNTKYRALRLDTGNF 225
LG A+T R HS + RGG+T R + DT +F
Sbjct: 166 LGLILASTATWLARRHSAKVRGGSTVIRPVSGDTDDF 202
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 599 LRCNHRRDHTDLGDSPRKPANALCGIALLEPL--NLSKTLPCQVFSCCLLTSLLVDN 435
LRC R ++ +GD + L + + + N + T+P ++SC + +L V N
Sbjct: 326 LRCLDLRSNSFVGDLTVVDFSGLANLTVFDVAANNFTGTIPPSIYSCTAMKALRVSN 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,478,191
Number of Sequences: 37544
Number of extensions: 389840
Number of successful extensions: 1129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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