Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30429.Seq
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 122 4e-28
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 36 0.032
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 1.6
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 2.8
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 29 4.9
SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051) 29 4.9
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 122 bits (293), Expect = 4e-28
Identities = 58/84 (69%), Positives = 67/84 (79%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 431
+ RIIDVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+
Sbjct: 59 KARIIDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQ 118
Query: 432 AIINKKRSQKTARKYLARQRLAKV 503
I+NKKRS RK AR+ AKV
Sbjct: 119 EILNKKRSNHCTRKLEARKANAKV 142
Score = 91.1 bits (216), Expect = 8e-19
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +1
Query: 88 PIRKKRKYELGRPAANTRLGPQRXHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 255
P+R KRK+ELGRP ANT++G +R H VR+RGGN K+RA RLDT NFSWGSE TRK
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRK 59
Score = 82.2 bits (194), Expect = 4e-16
Identities = 35/47 (74%), Positives = 43/47 (91%)
Frame = +2
Query: 512 LEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 652
+EEQF TGRL ACV+SRPGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 146 MEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 261 IIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 377
I+ V+++ +N E + +VK +IV VD PF W++ +
Sbjct: 75 ILSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
Frame = -1
Query: 376 CDSYHCLNGVASTTTIAFLTRVFVRTNSLL--DALYTTSMIRVCELNIPIPKRSYRCPDA 203
C Y C V +TT +A + ++++ S + A+ R C N
Sbjct: 700 CPGYKCATPVDNTTILALVPELYLKYTSQVRQKAVEANPSWRWCPGNKCSLVNKVTKRSC 759
Query: 202 AHGT*YFHHVNERSGFAEGRAWCLQRDALTHTSSSCVWAHVSHRWPFAY 56
HG + + A G+ WC + TH + C A + AY
Sbjct: 760 YHGNTFLDYGGVPVACACGKTWCSECQEETHWPAKCEIAQRFRKQTKAY 808
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 64 RATGGKRAPIRKKRKYELGRPAANTRLGP 150
R GG R P+++ +E +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 7 VFFFDPTKMGISRDHWHKRRATG--GKRAPIRKKRKYELG 120
VF P+K S+ K+ ATG GK AP +KK+K+ G
Sbjct: 474 VFSDSPSKNKESKSTKRKKSATGGEGKEAPAKKKQKHNDG 513
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 520 AIPHRAFAGLRGESPRSVW 576
A PH A +G+R SPR +W
Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 520 AIPHRAFAGLRGESPRSVW 576
A PH A +G+R PRS+W
Sbjct: 139 AYPHHAVSGVRVSPPRSIW 157
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 520 AIPHRAFAGLRGESPRSVW 576
A PH A +G+R PRS+W
Sbjct: 201 ACPHHAVSGVRVSPPRSIW 219
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 520 AIPHRAFAGLRGESPRSVW 576
A PH A +G+R PRS+W
Sbjct: 232 ACPHHAVSGVRVSPPRSIW 250
>SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)
Length = 387
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 272 NINDTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTEWXR 153
++ D +RV+H + EK +S + F PR +T W +
Sbjct: 114 SLRDFSIRVKHRNRMEKSTLSEFLETRVCFTPRRKTLWKK 153
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRXHSVRSRGGNTKYR 198
RR GG R+P + R+ R R P RSR G+ + R
Sbjct: 104 RRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERR 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,024,861
Number of Sequences: 59808
Number of extensions: 431109
Number of successful extensions: 1206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -