Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30429.Seq
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   154   7e-40
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   1.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   1.6  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   5.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  154 bits (374), Expect = 7e-40
 Identities = 67/75 (89%), Positives = 72/75 (96%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRXHSVRSRGGNTKYRALRL 210
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANT+LGPQR H+VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 211 DTGNFSWGSECSTRK 255
           DTGNFSWGSEC+TRK
Sbjct: 61  DTGNFSWGSECTTRK 75



 Score =  151 bits (365), Expect = 8e-39
 Identities = 70/85 (82%), Positives = 76/85 (89%)
 Frame = +3

Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 431
           +TRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY LPLGRK+GAKLTEAEE
Sbjct: 75  KTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEE 134

Query: 432 AIINKKRSQKTARKYLARQRLAKVE 506
            ++NKKRS+K   KY ARQR AKVE
Sbjct: 135 EVLNKKRSKKAEAKYKARQRFAKVE 159



 Score = 92.3 bits (219), Expect = 4e-21
 Identities = 40/48 (83%), Positives = 46/48 (95%)
 Frame = +2

Query: 509 ALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 652
           ALEEQF TGR+LAC++SRPGQCGR DGYILEGKELEFY+R+IKSK+AK
Sbjct: 161 ALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIKSKKAK 208


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 338 YNNCILDKGLCT 303
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 338 YNNCILDKGLCT 303
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 338 YNNCILDKGLCTHQ 297
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 545 PANALCGIALLEPLNLSK 492
           P N+LC +  L+ LNL++
Sbjct: 163 PVNSLCSLDNLQTLNLTE 180


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 338 YNNCILDKGLCTHQ 297
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,414
Number of Sequences: 438
Number of extensions: 3845
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)