Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30428.Seq
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    28   0.081
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    28   0.081
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    28   0.081
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    28   0.081
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   7.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.3  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   9.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   9.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.081
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 99   IFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETWPAKY 212
            IFL+    S F+   +    F C+ P + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.081
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 99   IFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETWPAKY 212
            IFL+    S F+   +    F C+ P + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.081
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 99   IFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETWPAKY 212
            IFL+    S F+   +    F C+ P + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.081
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 99   IFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETWPAKY 212
            IFL+    S F+   +    F C+ P + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = +2

Query: 410 FITTDTKRPHCIPSLGKYRLLSCELLQHLGGTSSLSPDSPTHMF 541
           F   D  RP    +L ++    C   QH+          P H+F
Sbjct: 557 FRNLDANRPTGGDALSEFNFCGCGWPQHMLLPKGTEAGYPCHLF 600


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 168 LTPSVCYVETWPAKYDVKVQSINSN 242
           LT +VC+V    A +  K  SIN N
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSINEN 214


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 168 LTPSVCYVETWPAKYDVKVQSINSN 242
           LT +VC+V    A +  K  SIN N
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSINEN 214


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 292 QNYPWRRSCHAA 327
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 292 QNYPWRRSCHAA 327
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 194 FNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 102
           FN    RR+  ++    RLT+     WFQ +
Sbjct: 204 FNKYLTRRRRIEIAESLRLTERQIKIWFQNR 234


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 194 FNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 102
           FN    RR+  ++    RLT+     WFQ +
Sbjct: 204 FNKYLTRRRRIEIAESLRLTERQIKIWFQNR 234


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 292 QNYPWRRSCHAA 327
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 194 FNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 102
           FN    RR+  ++    RLT+     WFQ +
Sbjct: 204 FNKYLTRRRRIEIAESLRLTERQIKIWFQNR 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,965
Number of Sequences: 336
Number of extensions: 3437
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)