Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30428.Seq
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   155   4e-39
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   155   4e-39
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   1.9  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   4.4  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   7.7  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  155 bits (377), Expect = 4e-39
 Identities = 74/90 (82%), Positives = 80/90 (88%)
 Frame = -3

Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
           TRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H TVRG KAEEILERGLKV+EYE
Sbjct: 31  TRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYE 90

Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIPQL 239
           L++ NFSATGNFGFGIQEHIDLGI   P +
Sbjct: 91  LKKRNFSATGNFGFGIQEHIDLGIKYDPSI 120



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 34/57 (59%), Positives = 45/57 (78%)
 Frame = -2

Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYD 96
           LG +YDPSIGIYG+DFYVV+ RPG  VA R+ + G+VG+ H++  ED + WF+QKYD
Sbjct: 112 LGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -1

Query: 591 DNSKNVMRNLHIRKLCLNICVGESGDRL 508
           + ++N M+ L I KL LNI +GESGDRL
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRL 30


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  155 bits (377), Expect = 4e-39
 Identities = 74/90 (82%), Positives = 80/90 (88%)
 Frame = -3

Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
           TRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H TVRG KAEEILERGLKV+EYE
Sbjct: 31  TRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYE 90

Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIPQL 239
           L++ NFSATGNFGFGIQEHIDLGI   P +
Sbjct: 91  LKKRNFSATGNFGFGIQEHIDLGIKYDPSI 120



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 34/57 (59%), Positives = 45/57 (78%)
 Frame = -2

Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYD 96
           LG +YDPSIGIYG+DFYVV+ RPG  VA R+ + G+VG+ H++  ED + WF+QKYD
Sbjct: 112 LGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -1

Query: 591 DNSKNVMRNLHIRKLCLNICVGESGDRL 508
           + ++N M+ L I KL LNI +GESGDRL
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRL 30


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 558 YEDSALHF*NYPSEPSSPFYLSST 629
           YE+ + +  +Y S+PSSP Y+SS+
Sbjct: 153 YEEDSYNNYDYTSDPSSPNYISSS 176


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 421 GYQKTALYT*PWKIQAVVL*VAPTPWRHE*PVTGFTNTYVQAKL---SDMKIPH 573
           G     +Y   W I A +L V P PWR+     G   + ++  L   +D + P+
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSSQRGLRKSIIRVFLFFQADFRSPY 174


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 192 ETWPAKYDVKVQSINSN*GIVLIPKSMCS*IPK 290
           E++   +DV ++S+NSN  I ++PK + + IP+
Sbjct: 433 ESYNDTFDV-IESVNSNTKIPILPKWLSNHIPR 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,411
Number of Sequences: 5004
Number of extensions: 54563
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)