Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30428.Seq
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 140 7e-34
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 140 7e-34
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 139 2e-33
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 93 2e-19
02_02_0196 + 7685933-7685961,7686086-7686284 89 2e-18
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 42 5e-04
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.28
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.48
01_03_0040 + 11888291-11888419,11888525-11888662,11888913-118890... 29 3.4
03_06_0059 + 31334842-31334868,31335064-31335330,31337162-31337344 29 4.5
01_06_0957 - 33352904-33353212,33353316-33353465,33353544-333536... 29 4.5
01_06_0514 + 29955129-29955796,29955903-29956023 29 4.5
11_06_0648 + 25873779-25874279,25874418-25875548 28 6.0
08_02_0286 - 15326876-15328135 28 6.0
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 28 7.9
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 140 bits (340), Expect = 7e-34
Identities = 69/88 (78%), Positives = 75/88 (85%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
TRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYE
Sbjct: 33 TRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYE 92
Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIP 245
L R NFS TG FGFGIQEHIDLGI P
Sbjct: 93 LLRRNFSETGCFGFGIQEHIDLGIKYDP 120
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/58 (68%), Positives = 46/58 (79%)
Frame = -2
Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
LG +YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 579 NVMRNLHIRKLCLNICVGESGDRL 508
N MR + ++KL LNI VGESGDRL
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRL 32
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 140 bits (340), Expect = 7e-34
Identities = 69/88 (78%), Positives = 75/88 (85%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
TRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYE
Sbjct: 33 TRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYE 92
Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIP 245
L R NFS TG FGFGIQEHIDLGI P
Sbjct: 93 LLRRNFSETGCFGFGIQEHIDLGIKYDP 120
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/58 (68%), Positives = 46/58 (79%)
Frame = -2
Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
LG +YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 579 NVMRNLHIRKLCLNICVGESGDRL 508
N MR + ++KL LNI VGESGDRL
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRL 32
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 139 bits (336), Expect = 2e-33
Identities = 68/84 (80%), Positives = 74/84 (88%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
TRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYE
Sbjct: 59 TRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYE 118
Query: 328 LRRDNFSATGNFGFGIQEHIDLGI 257
L R NFS TG FGFGIQEHIDLGI
Sbjct: 119 LLRRNFSDTGCFGFGIQEHIDLGI 142
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 579 NVMRNLHIRKLCLNICVGESGDRL 508
N MR + ++KL LNI VGESGDRL
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRL 58
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/56 (78%), Positives = 50/56 (89%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKV 341
TRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLK+
Sbjct: 33 TRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKI 88
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = -2
Query: 260 YQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
++YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 115 FRYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 170
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 579 NVMRNLHIRKLCLNICVGESGDRL 508
N MR + ++KL LNI VGESGDRL
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRL 32
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 89.4 bits (212), Expect = 2e-18
Identities = 40/62 (64%), Positives = 45/62 (72%)
Frame = -2
Query: 278 RTH*LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKY 99
R H YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY
Sbjct: 3 RMHQYDVWYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKY 62
Query: 98 DG 93
+G
Sbjct: 63 EG 64
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Frame = -3
Query: 502 AAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILER----GL-KVR 338
A K L +TGQ PV +KA+ +V SF IR I + T+RG L+R GL +
Sbjct: 127 AMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDRLINLGLPRTM 186
Query: 337 EY-ELRRDNFSATGNFGFGIQE 275
++ + ++F GNF G+++
Sbjct: 187 DFLGVNPNSFDGHGNFTIGLRD 208
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -3
Query: 412 EKIAVHCTVRGAKAEEILERGLK 344
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -3
Query: 412 EKIAVHCTVRGAKAEEILERGLK 344
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>01_03_0040 +
11888291-11888419,11888525-11888662,11888913-11889011,
11889171-11889557
Length = 250
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -1
Query: 324 GVTTSPPRVILASVFKNTLTWVSIRSLNWNLWTGLLR-RTWPARF---QRSTQKA*DRKS 157
G+T P + ++F + + W++ RS W + L++ P RF +R D +
Sbjct: 166 GLTAGEPDHNVDAIFSDIVAWLNGRSRTWTVEDRLMKMMASPDRFIRGERGGAADVDGDA 225
Query: 156 GISPPPHKGRCY 121
PP +G C+
Sbjct: 226 KRGPPRRRGGCF 237
>03_06_0059 + 31334842-31334868,31335064-31335330,31337162-31337344
Length = 158
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 573 MRNLHIRKLCLNICVGE-SGDRLLVPPRCWSNSQ 475
+R LH R+LC + C G+ GDR+L+ SNS+
Sbjct: 78 LRELHRRRLC-STCTGDGDGDRMLMQRNDSSNSK 110
>01_06_0957 -
33352904-33353212,33353316-33353465,33353544-33353684,
33354116-33354709
Length = 397
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 271 IDLGINTIPQLEFMDWTFTSYLAGQVS--T*HTEGVRQEKWDFPTASQRKML*SGSN 107
+ + + I + F +W T+ A ++ T T G ++W TA+ R+ML GS+
Sbjct: 94 LGVSVGVICNVMFPEWLITALFAVFLASATFKTYGTGMKRWRAETAAARRMLEGGSS 150
>01_06_0514 + 29955129-29955796,29955903-29956023
Length = 262
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 297 LPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCC 473
L V + + R + S+ T +P+ + S LA V + + +R+ +DR +Y+ L C
Sbjct: 171 LEVCKGVPRSSKKSIFTIEPIGELPSTLAC-AVSRSCCYCRKRLQQDRDIYMYLGEKAFC 229
Query: 474 PVSC 485
C
Sbjct: 230 SNEC 233
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 493 VLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEE 365
+LE LTG++P FSK + R E+ C G EE
Sbjct: 398 MLEVLTGKKPYFSKEEWEKEKTEERVEEEKREECEQEGKNTEE 440
>08_02_0286 - 15326876-15328135
Length = 419
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 418 RNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 320
R +++ V C V A A+E+L RG + + ELRR
Sbjct: 147 RGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 347
T A +++ +G FSK RY R GI K + V+ A+ E + E G+
Sbjct: 306 TEAGGLVKDASGNDLDFSKGRYLDRDAGIIATNKYLMPLVVKAAQ-EAMKEEGI 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,842
Number of Sequences: 37544
Number of extensions: 352498
Number of successful extensions: 922
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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