Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30428.Seq
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 160 8e-40
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 30 1.5
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 29 4.6
SB_50017| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 160 bits (389), Expect = 8e-40
Identities = 77/90 (85%), Positives = 82/90 (91%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+VHCTVRG KAEEILE+GLKV+EYE
Sbjct: 26 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKISVHCTVRGPKAEEILEKGLKVKEYE 85
Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIPQL 239
L + FSATGNFGFGIQEHIDLGI P +
Sbjct: 86 LVKGCFSATGNFGFGIQEHIDLGIKYDPSI 115
Score = 105 bits (252), Expect = 3e-23
Identities = 43/55 (78%), Positives = 51/55 (92%)
Frame = -2
Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 102
LG +YDPSIGIYG+DF+VVLGRPGFN++ R+ K G+VGFPHRLTK+DAMKWFQQK
Sbjct: 107 LGIKYDPSIGIYGMDFFVVLGRPGFNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -1
Query: 579 NVMRNLHIRKLCLNICVGESGDRL 508
N M+ L IRKL LNICVGESGDRL
Sbjct: 2 NPMKELRIRKLVLNICVGESGDRL 25
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 285 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRT 440
P P++P + L S + S S +KP+SRI ++L+ ++Q ++ + +P+ T
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPRIST 201
>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 156 HFSCLTPSVCYVETWPAKYDVKVQSINSN*GIVLIPKSMCS 278
HF C S ++ T +KY S NSN +VLIP S C+
Sbjct: 1088 HFRCWVLSQKHISTVVSKYSSN--SENSNFSLVLIPISACA 1126
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 507 LVPPRCWSNSQDNSLYFP 454
LVPP W+ SQD +Y+P
Sbjct: 746 LVPPMPWTGSQDAGMYYP 763
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 285 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIFSLRRIPK 431
P P++P + L + L T+KPL RIS++L+ ++Q + + + +P+
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPYKPLPR 352
>SB_50017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 203 GQVRRKSPVHKFQLRDRIDTQVNVFLNTEAKITRGGEVVTPQFIFSDFQTPLKDF 367
G+V KF RD I Q+ V TE KITR ++ +F+ + LK++
Sbjct: 81 GEVTYSHLGSKFHTRDFIKFQIRVDTETETKITR--VILQVLVLFTQMEIVLKNY 133
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 450 ALENTGCCPVSCSNTLAARVACHRIHQHICSSKAF*YEDSALHF*NYPSEPSSPFYLSST 629
AL+ TG P + + C R CS+K+ + A HF N+ P PFY S T
Sbjct: 555 ALQETGPAPETSRRFQSRPQRCPRRR---CSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 342 TFKPLSRISSALAPRTVQWTAIFSLRRIPKDR 437
T KP S + P+ +WTA L PK+R
Sbjct: 389 TLKPRSILPDGRTPKNPEWTACVKLGMNPKER 420
>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 421 RRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNF 293
RR + RGA A EI ++G+K + E RR+ G +
Sbjct: 147 RREDTFPKEKEARGANANEISKQGVKEKARETRREIVRQEGKY 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,310,859
Number of Sequences: 59808
Number of extensions: 407222
Number of successful extensions: 994
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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