Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30428.Seq
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   160   7e-40
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   159   2e-39
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   3.1  
L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    29   4.1  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   7.1  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm rece...    27   9.4  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  160 bits (389), Expect = 7e-40
 Identities = 75/90 (83%), Positives = 82/90 (91%)
 Frame = -3

Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
           TRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYE
Sbjct: 41  TRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYE 100

Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIPQL 239
           L ++NFS TGNFGFG+QEHIDLGI   P +
Sbjct: 101 LYKENFSDTGNFGFGVQEHIDLGIKYDPSI 130



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 38/58 (65%), Positives = 47/58 (81%)
 Frame = -2

Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
           LG +YDPSIGIYG+DFYVVL R G  +A RRR  G+VG  HR+ +E+++KWFQQKYDG
Sbjct: 122 LGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDG 179



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = -1

Query: 585 SKNVMRNLHIRKLCLNICVGESGDRL 508
           ++NVMR L I+KLCLNICVGESGDRL
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRL 40


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  159 bits (386), Expect = 2e-39
 Identities = 75/88 (85%), Positives = 81/88 (92%)
 Frame = -3

Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
           TRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYE
Sbjct: 41  TRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYE 100

Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIP 245
           L ++NFS TGNFGFG+QEHIDLGI   P
Sbjct: 101 LFKENFSDTGNFGFGVQEHIDLGIKYDP 128



 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 37/58 (63%), Positives = 45/58 (77%)
 Frame = -2

Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
           LG +YDP IGIYG+DFYVVL R G  V+ RRR  G++G  HR+ KE+ +KWFQQKYDG
Sbjct: 122 LGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDG 179



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = -1

Query: 582 KNVMRNLHIRKLCLNICVGESGDRL 508
           +NVMR L I+KLCLNICVGESGDRL
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRL 40


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 251 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 129
           DP  GI G+  + V G   F +A R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 290  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 427
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 329 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 418
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


>L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical
           protein K06H7.2 protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -1

Query: 282 FKNTLTWVSIRSLNWNLWTGLLRRTWPARFQRSTQKA*DRKSGISPPPHKGRCYEV 115
           FK    W    S    +  G+  R W  +FQR   K     S  S   + GRCY++
Sbjct: 302 FKEAFLWQRSTSNTEEITKGIEIRPWNEQFQRENAKF---WSDFSEYCYSGRCYQI 354


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 391 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQ 278
           ++R   AEE+  RG  +  Y E+RR     TG FG G +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFE 391


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 374 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 475
           F SS+C ++SNL+  T+     C  SL   RLLS
Sbjct: 97  FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 383 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 496
           S CT+D   F   D+K+  C+ S+ K   Y +++ E+  H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245


>AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 85 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 329 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRPH 439
           ++  DF+T +K+FF   +   T  S+  +TT  K  H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,832
Number of Sequences: 27780
Number of extensions: 303856
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)