Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30428.Seq
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 140 1e-33
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 140 1e-33
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 140 1e-33
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 140 1e-33
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 140 1e-33
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 43 2e-04
At1g29860.1 68414.m03650 WRKY family transcription factor simila... 29 2.2
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 2.8
At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,... 29 3.8
At3g58210.1 68416.m06490 meprin and TRAF homology domain-contain... 28 6.6
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 27 8.7
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 8.7
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 8.7
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 8.7
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 140 bits (338), Expect = 1e-33
Identities = 69/88 (78%), Positives = 75/88 (85%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
TRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYE
Sbjct: 33 TRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYE 92
Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIP 245
L R NFS TG FGFGIQEHIDLGI P
Sbjct: 93 LLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Score = 93.5 bits (222), Expect = 1e-19
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = -2
Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
LG +YDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = -1
Query: 579 NVMRNLHIRKLCLNICVGESGDRL 508
N MR++ ++KL LNI VGESGDRL
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRL 32
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 140 bits (338), Expect = 1e-33
Identities = 69/88 (78%), Positives = 75/88 (85%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
TRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYE
Sbjct: 23 TRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYE 82
Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIP 245
L R NFS TG FGFGIQEHIDLGI P
Sbjct: 83 LLRRNFSDTGCFGFGIQEHIDLGIKYDP 110
Score = 93.5 bits (222), Expect = 1e-19
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = -2
Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
LG +YDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 104 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 161
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -1
Query: 573 MRNLHIRKLCLNICVGESGDRL 508
MR++ ++KL LNI VGESGDRL
Sbjct: 1 MRDIKVQKLVLNISVGESGDRL 22
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 140 bits (338), Expect = 1e-33
Identities = 69/88 (78%), Positives = 75/88 (85%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
TRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYE
Sbjct: 33 TRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYE 92
Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIP 245
L R NFS TG FGFGIQEHIDLGI P
Sbjct: 93 LLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Score = 93.5 bits (222), Expect = 1e-19
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = -2
Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
LG +YDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = -1
Query: 579 NVMRNLHIRKLCLNICVGESGDRL 508
N MR++ ++KL LNI VGESGDRL
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRL 32
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 140 bits (338), Expect = 1e-33
Identities = 69/88 (78%), Positives = 75/88 (85%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
TRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYE
Sbjct: 33 TRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYE 92
Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIP 245
L R NFS TG FGFGIQEHIDLGI P
Sbjct: 93 LLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Score = 93.5 bits (222), Expect = 1e-19
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = -2
Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
LG +YDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = -1
Query: 579 NVMRNLHIRKLCLNICVGESGDRL 508
N MR++ ++KL LNI VGESGDRL
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRL 32
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 140 bits (338), Expect = 1e-33
Identities = 69/88 (78%), Positives = 75/88 (85%)
Frame = -3
Query: 508 TRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE 329
TRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYE
Sbjct: 23 TRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYE 82
Query: 328 LRRDNFSATGNFGFGIQEHIDLGINTIP 245
L R NFS TG FGFGIQEHIDLGI P
Sbjct: 83 LLRRNFSDTGCFGFGIQEHIDLGIKYDP 110
Score = 94.3 bits (224), Expect = 7e-20
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = -2
Query: 266 LGYQYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 93
LG +YDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 104 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEG 161
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -1
Query: 573 MRNLHIRKLCLNICVGESGDRL 508
MR++ ++KL LNI VGESGDRL
Sbjct: 1 MRDIKVQKLVLNISVGESGDRL 22
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/82 (25%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Frame = -3
Query: 502 AAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL-----KVR 338
A K + +TGQ+P+ ++AR ++ +F IR ++ + + T+RG L+R + + R
Sbjct: 108 AMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTR 167
Query: 337 EYE-LRRDNFSATGNFGFGIQE 275
+++ + +F GN+ G+++
Sbjct: 168 DFQGVSPSSFDGNGNYSIGVKD 189
>At1g29860.1 68414.m03650 WRKY family transcription factor similar
to DNA-binding protein 2 GI:4322940 from [Nicotiana
tabacum]
Length = 282
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 398 DSNLFITT-DTKRPHCIPSLGKYRLLSCELLQHLGGTSSLSPDSPTHMFKQSFLI 559
D ++ ITT + K H IPS + + + LL H GG SL P H Q FL+
Sbjct: 178 DPSIVITTYEGKHNHPIPSTLRGTVAAEHLLVHRGGGGSLLHSFPRH--HQDFLM 230
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 291 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLA 452
P++ V K + +SY +TFKP S + WT L R+ V+L+
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTN--GLHRVRSPVVVFLS 738
>At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
GI:3869280 from [Carica papaya]
Length = 724
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 552 KLCLNICVGESGDRLLVPPRCWSNSQDNSLYFPRLG 445
K CL+ C GE+ R PR W SQ+ + F LG
Sbjct: 678 KKCLSNC-GEASQRWYHVPRSWLKSQNLIVVFEELG 712
>At3g58210.1 68416.m06490 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 330
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -1
Query: 570 RNLHIRKLCLNICVGESGDRLLVPPRCWSNSQ----DNSLYFPRLGIQCGLLVSVVMKRL 403
+N H+RK C+N + + L PP+ SN DN+L + ++ G V + K+L
Sbjct: 217 KNPHLRKACMNFLLSLM-ETLCQPPQKLSNEDLVEADNALTYVKVS---GFKVDWLEKKL 272
Query: 402 LSIVQSEELKQKKSLR 355
+ + +E +Q R
Sbjct: 273 EEVKKKKEEEQTGEAR 288
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 370 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLG 260
E+ +E L+ RE L+ D F+ G GF G + +DLG
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLG 167
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 580 KCNAESSYQKALLEHMCW 527
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 580 KCNAESSYQKALLEHMCW 527
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 363 ISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCCPVSCSNTL 497
I S L R +W + SLR++ KDR A++ GC + +N +
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRK---AVKVPGCSSIEVNNVV 479
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,605
Number of Sequences: 28952
Number of extensions: 285547
Number of successful extensions: 802
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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