Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30427.Seq
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    48   7e-06
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    47   2e-05
01_06_1437 - 37358912-37359226                                         29   4.9  

>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = -3

Query: 665 YNLALGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISLI 507
           Y  A G L  +G +D LDG++AR   G ++  GS+LDP+ADKVL+  + I+++
Sbjct: 161 YLPAFGTLALSGASDWLDGFLARKM-GINSVFGSYLDPLADKVLIGCVAIAMV 212



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = -2

Query: 504 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRY--FDVTHATAQLAPTFISK 334
           +DL+   L  L+V RD+ LV      R  SL     + S +   D  H   ++ P FISK
Sbjct: 214 KDLLHPGLVGLVVVRDLLLVGGAVYKRASSLGWKWNSWSDFVNLDAIHRE-KVKPLFISK 272

Query: 333 VNTAVQLLLVGTTLASPVFG 274
           VNT  QL+LV   L  P FG
Sbjct: 273 VNTVFQLMLVAAALLQPEFG 292


>03_02_0594 -
           9695616-9696042,9696646-9697260,9697410-9697717,
           9700145-9700235,9700698-9700759,9701256-9702962,
           9703789-9703870,9703972-9704057,9704855-9704968,
           9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = -3

Query: 650 GLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 510
           G+ + A +TD LDG+IAR  +   T  G+FLDP+ADK++VA   + L
Sbjct: 169 GIFLAAAVTDWLDGYIARKMQ-LGTPFGAFLDPVADKLMVAATLVLL 214


>01_06_1437 - 37358912-37359226
          Length = 104

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 411 PPPRTLSRYFDVTHATAQLAPTFI 340
           PPPR L R   + H++ +L P F+
Sbjct: 60  PPPRALDRLISLRHSSLELLPLFL 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,769,128
Number of Sequences: 37544
Number of extensions: 413150
Number of successful extensions: 757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)