Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30427.Seq
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical ...    75   5e-14
AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical ...    75   5e-14
U40944-2|ABC71812.1|  306|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U40944-1|AAA81718.3|  341|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical
           protein F23H11.9b protein.
          Length = 222

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 34/76 (44%), Positives = 53/76 (69%)
 Frame = -2

Query: 498 LIPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLSRYFDVTHATAQLAPTFISKVNTAV 319
           LIP+ LT +++ RDI L+  GF  RY  + PP +LSR+F+   ++ Q+ PT +SK+NT +
Sbjct: 112 LIPLPLTSVVILRDICLIGGGFYKRYQVMSPPYSLSRFFNPQVSSMQVVPTMMSKINTVL 171

Query: 318 QLLLVGTTLASPVFGY 271
           Q+ LV  +L+SPVF +
Sbjct: 172 QITLVALSLSSPVFDF 187



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/55 (54%), Positives = 42/55 (76%)
 Frame = -3

Query: 674 QNNYNLALGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 510
           Q+N+  A  L   AG TDLLDG+IARN  GQ + +GS LDP+ADK+L++T+FI++
Sbjct: 53  QHNFTPAFVLFTVAGATDLLDGFIARNVPGQKSLLGSVLDPVADKLLISTMFITM 107


>AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical
           protein F23H11.9a protein.
          Length = 246

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 34/76 (44%), Positives = 53/76 (69%)
 Frame = -2

Query: 498 LIPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLSRYFDVTHATAQLAPTFISKVNTAV 319
           LIP+ LT +++ RDI L+  GF  RY  + PP +LSR+F+   ++ Q+ PT +SK+NT +
Sbjct: 136 LIPLPLTSVVILRDICLIGGGFYKRYQVMSPPYSLSRFFNPQVSSMQVVPTMMSKINTVL 195

Query: 318 QLLLVGTTLASPVFGY 271
           Q+ LV  +L+SPVF +
Sbjct: 196 QITLVALSLSSPVFDF 211



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/55 (54%), Positives = 42/55 (76%)
 Frame = -3

Query: 674 QNNYNLALGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 510
           Q+N+  A  L   AG TDLLDG+IARN  GQ + +GS LDP+ADK+L++T+FI++
Sbjct: 77  QHNFTPAFVLFTVAGATDLLDGFIARNVPGQKSLLGSVLDPVADKLLISTMFITM 131


>U40944-2|ABC71812.1|  306|Caenorhabditis elegans Hypothetical
           protein PDB1.1b protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 629 ITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISLIGRTSYL 489
           I  LL  WI +NW   +  +G+F   M    ++ T F+++     YL
Sbjct: 173 IVALLGAWIGQNWWKYADPLGAF---MVSGFIIVTWFLTIREHIPYL 216


>U40944-1|AAA81718.3|  341|Caenorhabditis elegans Hypothetical
           protein PDB1.1a protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 629 ITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISLIGRTSYL 489
           I  LL  WI +NW   +  +G+F   M    ++ T F+++     YL
Sbjct: 208 IVALLGAWIGQNWWKYADPLGAF---MVSGFIIVTWFLTIREHIPYL 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,393,906
Number of Sequences: 27780
Number of extensions: 378349
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)